View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21181_low_13 (Length: 324)

Name: NF21181_low_13
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21181_low_13
NF21181_low_13
[»] chr2 (35 HSPs)
chr2 (85-181)||(33012037-33012134)
chr2 (85-180)||(43474192-43474288)
chr2 (94-181)||(28261966-28262053)
chr2 (85-181)||(11937922-11938020)
chr2 (85-180)||(44942246-44942342)
chr2 (85-172)||(27095675-27095762)
chr2 (85-181)||(9690037-9690134)
chr2 (85-180)||(12704648-12704744)
chr2 (86-180)||(7073013-7073108)
chr2 (85-172)||(20561196-20561283)
chr2 (88-180)||(5754249-5754342)
chr2 (85-174)||(18089456-18089545)
chr2 (85-172)||(34416825-34416912)
chr2 (85-166)||(4604371-4604452)
chr2 (85-174)||(22597103-22597192)
chr2 (85-181)||(38535369-38535466)
chr2 (88-160)||(15919856-15919928)
chr2 (85-159)||(25067835-25067909)
chr2 (85-166)||(17268188-17268269)
chr2 (88-172)||(9978736-9978820)
chr2 (85-144)||(13740724-13740783)
chr2 (87-160)||(36867990-36868063)
chr2 (126-181)||(12891194-12891250)
chr2 (88-160)||(32015202-32015274)
chr2 (85-157)||(35333490-35333562)
chr2 (85-172)||(31908880-31908967)
chr2 (85-160)||(38384506-38384581)
chr2 (88-145)||(4426725-4426782)
chr2 (86-181)||(4739291-4739385)
chr2 (85-150)||(34963130-34963194)
chr2 (85-181)||(13879070-13879175)
chr2 (85-181)||(14019195-14019300)
chr2 (85-164)||(17767616-17767694)
chr2 (85-152)||(34470954-34471023)
chr2 (126-163)||(28231197-28231234)
[»] chr7 (37 HSPs)
chr7 (86-181)||(46026094-46026190)
chr7 (85-172)||(48304459-48304546)
chr7 (85-181)||(42644636-42644733)
chr7 (85-172)||(28664976-28665063)
chr7 (85-172)||(45457620-45457707)
chr7 (88-172)||(10574351-10574435)
chr7 (85-180)||(17473787-17473883)
chr7 (85-180)||(17579331-17579427)
chr7 (85-172)||(1281201-1281288)
chr7 (85-181)||(36579376-36579473)
chr7 (85-160)||(9785299-9785374)
chr7 (86-148)||(2622586-2622648)
chr7 (85-181)||(11832978-11833076)
chr7 (85-181)||(17509268-17509364)
chr7 (85-181)||(17543850-17543946)
chr7 (85-173)||(21990630-21990719)
chr7 (85-181)||(27535419-27535513)
chr7 (85-180)||(5684326-5684422)
chr7 (85-180)||(5709376-5709472)
chr7 (85-160)||(22747572-22747646)
chr7 (85-181)||(42603833-42603930)
chr7 (85-160)||(39533039-39533114)
chr7 (85-160)||(21603445-21603519)
chr7 (85-172)||(45482034-45482121)
chr7 (85-181)||(6667355-6667453)
chr7 (85-181)||(32740713-32740810)
chr7 (88-160)||(21954886-21954957)
chr7 (85-149)||(24320287-24320351)
chr7 (105-172)||(40761559-40761626)
chr7 (89-181)||(41287917-41288011)
chr7 (85-172)||(37376101-37376187)
chr7 (87-148)||(4621433-4621494)
chr7 (108-160)||(36719628-36719680)
chr7 (86-160)||(39707272-39707345)
chr7 (131-180)||(15674735-15674785)
chr7 (85-118)||(10094465-10094498)
chr7 (85-118)||(15674676-15674709)
[»] chr5 (22 HSPs)
chr5 (85-180)||(17699514-17699610)
chr5 (85-181)||(32347778-32347875)
chr5 (85-159)||(42609127-42609201)
chr5 (85-180)||(28040590-28040686)
chr5 (85-166)||(17331304-17331385)
chr5 (85-172)||(27241034-27241121)
chr5 (85-172)||(43493842-43493929)
chr5 (85-181)||(6281004-6281101)
chr5 (85-166)||(33164532-33164613)
chr5 (85-172)||(17096303-17096393)
chr5 (85-173)||(23882180-23882268)
chr5 (85-159)||(26295122-26295196)
chr5 (85-181)||(3740318-3740414)
chr5 (103-172)||(7771888-7771957)
chr5 (85-157)||(34431045-34431117)
chr5 (85-180)||(178170-178265)
chr5 (85-160)||(29097771-29097846)
chr5 (91-180)||(981095-981185)
chr5 (85-181)||(20483146-20483243)
chr5 (85-160)||(6681938-6682013)
chr5 (85-159)||(12439698-12439771)
chr5 (85-171)||(39531467-39531551)
[»] chr1 (26 HSPs)
chr1 (89-181)||(33487098-33487191)
chr1 (88-181)||(3232748-3232842)
chr1 (85-181)||(424355-424452)
chr1 (85-181)||(28678194-28678291)
chr1 (85-169)||(7995624-7995708)
chr1 (85-172)||(32784078-32784165)
chr1 (85-180)||(20411534-20411630)
chr1 (85-172)||(29205255-29205342)
chr1 (85-181)||(4882423-4882520)
chr1 (85-172)||(14265254-14265341)
chr1 (85-166)||(12871597-12871678)
chr1 (85-181)||(27534659-27534756)
chr1 (85-181)||(42490853-42490950)
chr1 (86-181)||(45750438-45750534)
chr1 (85-160)||(13488600-13488675)
chr1 (87-157)||(15791554-15791624)
chr1 (85-159)||(33125870-33125943)
chr1 (85-147)||(37822409-37822471)
chr1 (85-181)||(17347559-17347655)
chr1 (101-172)||(33939082-33939153)
chr1 (85-164)||(32878686-32878764)
chr1 (85-181)||(45193690-45193787)
chr1 (85-166)||(18343590-18343671)
chr1 (86-181)||(4871091-4871187)
chr1 (88-172)||(42276327-42276410)
chr1 (85-132)||(44517157-44517204)
[»] chr3 (31 HSPs)
chr3 (85-172)||(14585432-14585519)
chr3 (85-180)||(31270287-31270383)
chr3 (85-180)||(31462818-31462914)
chr3 (85-181)||(3456903-3457000)
chr3 (85-172)||(30156354-30156440)
chr3 (85-172)||(36691871-36691958)
chr3 (85-172)||(53155502-53155589)
chr3 (86-180)||(27189467-27189561)
chr3 (85-181)||(1074965-1075062)
chr3 (85-181)||(48400859-48400956)
chr3 (85-180)||(53402591-53402687)
chr3 (85-172)||(34960930-34961017)
chr3 (85-172)||(36624766-36624853)
chr3 (85-166)||(11819059-11819140)
chr3 (85-181)||(13702044-13702141)
chr3 (85-146)||(22484961-22485022)
chr3 (89-166)||(32080830-32080907)
chr3 (85-180)||(40013344-40013442)
chr3 (85-181)||(48652512-48652609)
chr3 (88-172)||(38527233-38527317)
chr3 (85-180)||(35174665-35174761)
chr3 (85-160)||(54239090-54239165)
chr3 (85-171)||(4206583-4206669)
chr3 (85-170)||(19645193-19645278)
chr3 (85-150)||(49628159-49628224)
chr3 (85-160)||(40883940-40884016)
chr3 (85-160)||(41868366-41868442)
chr3 (85-181)||(24483750-24483847)
chr3 (85-180)||(55090655-55090751)
chr3 (85-180)||(39610165-39610269)
chr3 (85-150)||(39429573-39429637)
[»] scaffold0312 (1 HSPs)
scaffold0312 (85-181)||(6097-6194)
[»] chr8 (27 HSPs)
chr8 (85-178)||(13570798-13570891)
chr8 (85-181)||(39067761-39067858)
chr8 (251-307)||(13570962-13571018)
chr8 (85-172)||(37612623-37612710)
chr8 (85-181)||(10338894-10338990)
chr8 (85-181)||(31202418-31202515)
chr8 (85-180)||(24791240-24791336)
chr8 (85-172)||(12329596-12329683)
chr8 (85-172)||(30026952-30027039)
chr8 (85-181)||(2234542-2234639)
chr8 (85-159)||(9501572-9501647)
chr8 (88-159)||(14600773-14600844)
chr8 (85-157)||(10334159-10334231)
chr8 (85-145)||(23971166-23971226)
chr8 (85-172)||(1810292-1810378)
chr8 (89-164)||(30039408-30039482)
chr8 (88-181)||(31407823-31407917)
chr8 (85-160)||(41361714-41361789)
chr8 (100-181)||(7583851-7583933)
chr8 (85-149)||(1039965-1040029)
chr8 (85-180)||(2025281-2025377)
chr8 (85-160)||(10147928-10148004)
chr8 (86-181)||(11161842-11161938)
chr8 (85-181)||(24699790-24699889)
chr8 (85-172)||(3204828-3204914)
chr8 (85-116)||(31308174-31308205)
chr8 (85-124)||(37128558-37128597)
[»] chr4 (44 HSPs)
chr4 (85-181)||(24568777-24568874)
chr4 (85-180)||(22757055-22757151)
chr4 (85-172)||(7060294-7060381)
chr4 (85-172)||(26742527-26742614)
chr4 (85-172)||(31521952-31522039)
chr4 (85-181)||(26674332-26674429)
chr4 (85-181)||(43244445-43244539)
chr4 (86-181)||(27394790-27394886)
chr4 (85-160)||(394338-394413)
chr4 (85-172)||(478076-478162)
chr4 (85-172)||(44757106-44757193)
chr4 (85-181)||(24825609-24825706)
chr4 (85-157)||(13965545-13965617)
chr4 (85-180)||(20399967-20400063)
chr4 (85-181)||(24100101-24100196)
chr4 (85-181)||(8712490-8712587)
chr4 (85-180)||(7083880-7083976)
chr4 (88-160)||(19745371-19745443)
chr4 (88-160)||(19794363-19794435)
chr4 (85-160)||(51152107-51152182)
chr4 (85-172)||(29268841-29268928)
chr4 (85-181)||(25658127-25658224)
chr4 (85-172)||(626612-626698)
chr4 (85-172)||(7861269-7861356)
chr4 (85-160)||(22049469-22049543)
chr4 (90-145)||(36124416-36124471)
chr4 (85-152)||(38944211-38944278)
chr4 (85-181)||(30201998-30202095)
chr4 (85-180)||(39837555-39837652)
chr4 (85-181)||(42197513-42197609)
chr4 (85-180)||(6911641-6911737)
chr4 (86-159)||(5814330-5814403)
chr4 (85-166)||(7084182-7084263)
chr4 (85-181)||(11210377-11210474)
chr4 (85-180)||(29922795-29922894)
chr4 (85-149)||(20887819-20887883)
chr4 (89-152)||(28837067-28837128)
chr4 (85-145)||(50801214-50801274)
chr4 (85-160)||(39523400-39523466)
chr4 (85-159)||(12717182-12717255)
chr4 (85-118)||(43493351-43493384)
chr4 (85-152)||(45351134-45351203)
chr4 (85-152)||(45360613-45360682)
chr4 (85-157)||(3159028-3159099)
[»] chr6 (15 HSPs)
chr6 (85-180)||(15590143-15590239)
chr6 (89-181)||(29927447-29927540)
chr6 (85-172)||(21507872-21507959)
chr6 (85-181)||(6419922-6420019)
chr6 (85-180)||(8693721-8693820)
chr6 (85-157)||(14783235-14783307)
chr6 (85-167)||(31937483-31937564)
chr6 (85-181)||(12481434-12481531)
chr6 (85-181)||(23654210-23654307)
chr6 (100-160)||(4085000-4085060)
chr6 (85-160)||(35219968-35220042)
chr6 (85-160)||(4921945-4922021)
chr6 (85-180)||(6296313-6296412)
chr6 (85-180)||(6303123-6303222)
chr6 (85-174)||(2304874-2304963)
[»] scaffold0155 (1 HSPs)
scaffold0155 (85-159)||(35065-35139)
[»] scaffold0056 (1 HSPs)
scaffold0056 (85-174)||(74132-74221)
[»] scaffold1379 (1 HSPs)
scaffold1379 (85-166)||(1150-1231)
[»] scaffold0001 (1 HSPs)
scaffold0001 (85-172)||(404322-404409)
[»] scaffold0121 (1 HSPs)
scaffold0121 (109-181)||(13337-13409)
[»] scaffold0321 (1 HSPs)
scaffold0321 (85-152)||(7188-7255)
[»] scaffold0536 (1 HSPs)
scaffold0536 (85-160)||(2882-2959)
[»] scaffold0432 (1 HSPs)
scaffold0432 (85-160)||(2481-2555)
[»] scaffold0294 (1 HSPs)
scaffold0294 (85-181)||(4131-4227)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 33012134 - 33012037
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  33012134 cacttattcaattagaatagaaggaaaaacaattcggatgagtgatttttgggtcaaaattgaccctaaatcacccgtctgaaaagaagaagaagaag 33012037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 43474192 - 43474288
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  43474192 cacttattcaattaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaagaa 43474288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 28261966 - 28262053
Alignment:
Q  94 aattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  | |||||||||    
T  28261966 aattatgatagaaggaaaaacaattcggatgagtgatttttgggtcaaaattgaccctaaatcacccatctgaaagaagaagaagaag 28262053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 11937922 - 11938020
Alignment:
Q  85 cacttattcaattaggatagaa-ggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  11937922 cacttattcaattaggatagaaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 11938020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 44942342 - 44942246
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  44942342 cacttattcaattaggatagaagaaaaaacaactcggaggggtgatttttgggtcaaaattgaccataaatcacccatctgaaaagaagaagaagaa 44942246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 27095762 - 27095675
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||||| | ||| | ||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  27095762 cacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttaggtcaaaattgaccctaaatcacccatctgacaagaa 27095675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 9690037 - 9690134
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||| |||||| || ||||||| ||||||||||| |||||||||    
T  9690037 cacttattcaattaggatagaaggaaaaacagttcggaggggtgatttttgggtcaaatttgaccttaaatcacccctctgaaaagaagaagaagaag 9690134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 12704744 - 12704648
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  12704744 cacttattcaattaggatataaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaagaa 12704648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 7073013 - 7073108
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||||||| ||||| | | | | ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  7073013 acttattcaattaggatagaaggaaaaccaattcgaaagggcgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaa 7073108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 20561196 - 20561283
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||| ||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  20561196 cacttattcgatttggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaacagaa 20561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 5754342 - 5754249
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||| |||||||||||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  5754342 ttattcaactaggatagaaggaaaaacaattcggagggatgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaagaa 5754249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 18089456 - 18089545
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaa 174  Q
    ||||||||||||||||||| ||| |||||||||| ||| ||||||||||||| ||||||||||||||| ||||||| ||| |||| ||||    
T  18089456 cacttattcaattaggatataagaaaaaacaattcggaggagtgatttttggatcaaaattgaccctaaatcacccctctaaaaaaaaaa 18089545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 34416825 - 34416912
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| |||||||||||||| ||| |  |||||||| |||||||||||||| ||||||| || |||||||||||    
T  34416825 cacttattcaattaggatataaggaaaaacaattcggagggatgattttttggtcaaaattgaccttagatcatccctctgaaaagaa 34416912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 4604371 - 4604452
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    ||||||||||||||| |||||||||||||||| | | |||||| ||||||||||||||||||||| || ||||||| |||||    
T  4604371 cacttattcaattagaatagaaggaaaaacaactcgaatgagtaatttttgggtcaaaattgaccttaaatcacccttctga 4604452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 22597192 - 22597103
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaa 174  Q
    |||||||| ||||||||||||||||||||||| | ||| |  ||||||||||||||||||||||| || ||||||| ||||| |||||||    
T  22597192 cacttatttaattaggatagaaggaaaaacaactcggagggatgatttttgggtcaaaattgaccttaaatcacccctctgacaagaaaa 22597103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 38535369 - 38535466
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| |||||||||||||| ||||   | | ||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  38535369 cacttattcaattatgatagaaggaaaaaaaattcaaaggggtgctttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 38535466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 15919928 - 15919856
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||| ||| |||||||    
T  15919928 ttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgactctaaatcaccc 15919856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 25067909 - 25067835
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||||||  |||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||||||    
T  25067909 cacttattcaattaaaatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacc 25067835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 17268188 - 17268269
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||||||||||||||||||||| | | | |  ||||||||||||||||||||||| || ||||||| |||||    
T  17268188 cacttattcaattaggatagaaggaaaaacaactcgaagggatgatttttgggtcaaaattgaccataaatcacccctctga 17268269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 9978736 - 9978820
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| |||| |||||||||||||| | | | |||||||||||||||||||||||| || ||||||| |||| ||||||    
T  9978736 ttattcaattaagataaaaggaaaaacaatttgaaggggtgatttttgggtcaaaattgaccttaaatcacccctctggaaagaa 9978820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 13740724 - 13740783
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaat 144  Q
    |||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||    
T  13740724 cacttattcaattaggatagaaggaaaaacaattcggagtggtgatttttgggtcaaaat 13740783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 36868063 - 36867990
Alignment:
Q  87 cttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||| |||||| ||||||||||||||||||  || | |||||||||| |||||||||||||||| |||||||    
T  36868063 cttattgaattagaatagaaggaaaaacaattcagaggggtgatttttgagtcaaaattgaccctaaatcaccc 36867990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 12891194 - 12891250
Alignment:
Q  126 gtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  12891194 gtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 12891250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 32015274 - 32015202
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||| ||||| |||| |||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||    
T  32015274 ttattgaattatgatataaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcaccc 32015202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 35333562 - 35333490
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    |||||||||||||||||||| |||||||||||||   | | |||||||||||||||||||||| |||| ||||    
T  35333562 cacttattcaattaggatagcaggaaaaacaattcttaggggtgatttttgggtcaaaattgatcctaaatca 35333490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 31908880 - 31908967
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| ||||||| ||| |||||||||| ||| | ||||||||||| ||||||||||| ||| |||| || ||| |||||||    
T  31908880 cacttattcaactaggataaaagaaaaaacaattcggaagggtgatttttggatcaaaattgactctaaatcatccctctaaaaagaa 31908967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 38384506 - 38384581
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||| || |||||||||||| | |||   ||||||||||||||||||||||||| | |||||||    
T  38384506 cacttattcaattagggtataaggaaaaacaaatcggagatgtgatttttgggtcaaaattgacccaaaatcaccc 38384581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 4426725 - 4426782
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaatt 145  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||| | ||||||||    
T  4426725 ttattcaattaggatagaaggaaaaacaaatcggatgactgatttttagatcaaaatt 4426782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 4739385 - 4739291
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga-aaagaaaagaagaag 181  Q
    ||||||| ||||||||| ||||||||||||| | ||| | |||||||| |||||  ||||||||||| ||||||| || || ||| |||||||||||    
T  4739385 acttatttaattaggatggaaggaaaaacaactcggaggggtgattttggggtc--aattgaccctaaatcacccctccgacaaaaaaaagaagaag 4739291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 34963130 - 34963194
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccc 150  Q
    |||||||||||||||| ||||||||||||||| |  || | ||||||||| |||||||||||||||    
T  34963130 cacttattcaattagggtagaaggaaaaacaaatcaga-gggtgatttttaggtcaaaattgaccc 34963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 13879070 - 13879175
Alignment:
Q  85 cacttattcaattaggatagaaggaa--------aaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aag 175  Q
    ||||||||||||||||||||||||||        |||||| | ||| | |||||| |||||||||||||||||||| |||| || ||||| ||||| |||    
T  13879070 cacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcatccctctgacaagaagaag 13879169  T
Q  176 aagaag 181  Q
    ||||||    
T  13879170 aagaag 13879175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 14019195 - 14019300
Alignment:
Q  85 cacttattcaattaggatagaaggaa--------aaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aag 175  Q
    ||||||||||||||||||||||||||        |||||| | ||| | |||||| |||||||||||||||||||| |||| || ||||| ||||| |||    
T  14019195 cacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcatccctctgacaagaagaag 14019294  T
Q  176 aagaag 181  Q
    ||||||    
T  14019295 aagaag 14019300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 17767616 - 17767694
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatct 164  Q
    |||||||| |||||||||| |||||||||||| | | | | |||| || ||||||||||||||| ||| |||||||||||    
T  17767616 cacttatttaattaggatataaggaaaaacaactcgaaggggtga-ttctgggtcaaaattgactctaaatcacccatct 17767694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 34471023 - 34470954
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtg--atttttgggtcaaaattgacccta 152  Q
    |||| ||||||||| ||||||| || |||||||| ||| | |||  ||||||||||||||||||||||||    
T  34471023 cactgattcaattaagatagaaagataaacaattcggaggggtgtgatttttgggtcaaaattgacccta 34470954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 28231234 - 28231197
Alignment:
Q  126 gtgatttttgggtcaaaattgaccctagatcacccatc 163  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  28231234 gtgatttttgggttaaaattgaccctaaatcacccatc 28231197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 46026094 - 46026190
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  46026094 acttattcaattaggatagaaggaaaaacaattcggatgtgtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 46026190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 48304459 - 48304546
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  48304459 cacttattcaattaggatagcaggaaaagcaattcggatgggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaa 48304546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 42644733 - 42644636
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||||    
T  42644733 cacttattcaattaggatagaaggaaaaacaattcaaatgagtgatttttgagtcaaaattgatcctaaatcacccctctgaaaagaagaagaagaag 42644636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 28664976 - 28665063
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||||||||||||| ||||||||||||| |||||    
T  28664976 cacttattcaattaggatagaaggaaaaacaactcggaggggtgattttagggtcaaaattgaccctaaatcacccatctgacaagaa 28665063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 45457620 - 45457707
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||| ||| |||||||    
T  45457620 cacttattcaattaagatagaaggaaaaacaattcggaggagtgatttttgcgtcaaaattgaccctaaatcacccctctaaaaagaa 45457707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 10574435 - 10574351
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||| |||||||||||||| ||| | |||||||||| |||||||||||||||| ||||||||||| |||||||    
T  10574435 ttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgagtcaaaattgaccctaaatcacccatctaaaaagaa 10574351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 17473787 - 17473883
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||||||||| ||||||||||||||||| |||||||  |||||||||| ||||||||    
T  17473787 cacttattcaattaggataaaaggaaaaacaattcggaggggtgattttttggtcaaaattgaccctaaatcaccccactgaaaagaataagaagaa 17473883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 17579427 - 17579331
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||||||||| ||||||||||||||||| |||||||  |||||||||| ||||||||    
T  17579427 cacttattcaattaggataaaaggaaaaacaattcggaggggtgattttttggtcaaaattgaccctaaatcaccccactgaaaagaataagaagaa 17579331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 1281201 - 1281288
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||| ||| || ||||||||||| ||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  1281201 cacttattcaattagaatataatgaaaaacaattcggatgggtgattttttggtcaaaatggaccctaaatcacccatctgaaaagaa 1281288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 36579376 - 36579473
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||||||||| |||| || ||| ||||||| |||||||||    
T  36579376 cacttattcaactaggatagaaggaaaaacaattcggaggggtgattttcgggtcaaaattgaccctaaatcatccctcttaaaagaagaagaagaag 36579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 9785374 - 9785299
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| ||||||||||||||||||| | | | ||||||||||||||||||||||||||| |||||||    
T  9785374 cacttattcaattaagatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatcaccc 9785299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 2622648 - 2622586
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgac 148  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  2622648 acttattcaattaagatagaaggaaaaacaattcggatgcgtgatttttgggtcaaaattgac 2622586  T

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Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 11833076 - 11832978
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgag-tgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||| |||||||||||||||| ||| | | ||||||||||||||||||||||| || |||| || ||||||||||| |||||||||    
T  11833076 cacttattcaattaggaaagaaggaaaaacaattcggagggggtgatttttgggtcaaaattgaccataaatcatccctctgaaaagaagaagaagaag 11832978  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 17509268 - 17509364
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||| ||||||||| |||| ||| | ||||||||| ||||||||||||||||| |||| || ||||||||||| |||||||||    
T  17509268 cacttattcaattaggataaaaggaaaaataattcggagg-gtgattttttggtcaaaattgaccctaaatcatccctctgaaaagaagaagaagaag 17509364  T

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Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 17543946 - 17543850
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||| ||||||||| |||| ||| | ||||||||| ||||||||||||||||| |||| || ||||||||||| |||||||||    
T  17543946 cacttattcaattaggataaaaggaaaaataattcggagg-gtgattttttggtcaaaattgaccctaaatcatccctctgaaaagaagaagaagaag 17543850  T

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Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 21990719 - 21990630
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaa 173  Q
    |||||||||||||||||||| |||||||| ||||| ||| | |||||||||  |||||||||||||||| ||||||| ||||||||||||    
T  21990719 cacttattcaattaggatagcaggaaaaaacaattcggaggggtgatttttcagtcaaaattgaccctaaatcacccctctgaaaagaaa 21990630  T

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Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 27535513 - 27535419
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    ||||||| ||||||| |||||||||||||||||| ||||| ||||||||||| | ||||||||||||| ||||||| |||| ||  |||||||||||    
T  27535513 cacttatacaattagaatagaaggaaaaacaattcggatgggtgatttttggataaaaattgaccctaaatcacccctctgtaa--aaaagaagaag 27535419  T

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Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 5684422 - 5684326
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||| ||||||||||| |||   |||||||||| |||||||||||||||| ||||||| | | ||||||| ||||||||    
T  5684422 cacttattcaattaggatagaatgaaaaacaattcggagaggtgatttttgcgtcaaaattgaccctaaatcacccctttaaaaagaataagaagaa 5684326  T

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Target: chr7; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 5709472 - 5709376
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||| ||||||||||| |||   |||||||||| |||||||||||||||| ||||||| | | ||||||| ||||||||    
T  5709472 cacttattcaattaggatagaatgaaaaacaattcggagaggtgatttttgcgtcaaaattgaccctaaatcacccctttaaaaagaataagaagaa 5709376  T

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Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 22747572 - 22747646
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||||||||||||| |||||||    
T  22747572 cacttattcaattaggatagaaggaaaa-caacttggaggggtgatttttgggtcaaaattgaccctaaatcaccc 22747646  T

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Target: chr7; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 42603833 - 42603930
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||| ||||||||||| ||| | |||||||||| ||||||||||||| || ||||||  ||| ||||||| |||||||||    
T  42603833 cacttattcaattatgatagaatgaaaaacaattcggaggggtgatttttgagtcaaaattgaccataaatcaccgctctaaaaagaagaagaagaag 42603930  T

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Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 39533039 - 39533114
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgag-tgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| |||||||||||||||||||  || ||| |||||||||||||||||||||||||| |||||||    
T  39533039 cacttattcaattaagatagaaggaaaaacaattcaga-gagatgatttttgggtcaaaattgaccctaaatcaccc 39533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 21603519 - 21603445
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||||||||||||||||||  || | ||| ||||| ||||||||||||||||| |||||||    
T  21603519 cacttattcaattaggatagaaggaaaaacaattcagaggggtgcttttt-ggtcaaaattgaccctaaatcaccc 21603445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 45482121 - 45482034
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| ||||||||||||||||||||||  | ||| | |||||||| |||||||||||||||||| ||||| | ||||| |||||    
T  45482121 cacttatttaattaggatagaaggaaaaacagctcggaggggtgattttggggtcaaaattgaccctaaatcactcctctgacaagaa 45482034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 6667453 - 6667355
Alignment:
Q  85 cacttattcaa-ttaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||| |||| ||||||| |||||||||| ||  | ||||||||||||||||||||||||||| ||||| | ||| ||||||| |||||||||    
T  6667453 cacttattcaaattagaatagaagaaaaaacaattcggtggggtgatttttgggtcaaaattgaccctaaatcactcctctaaaaagaagaagaagaag 6667355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 32740810 - 32740713
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtga-tttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||||| |   | |||| ||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||    
T  32740810 cacttattcaattaggatagaaggaaaaacaattcgagggggtgatttttttggtcaaaattgactctaaatcaccc-tctgaaaagaagaagaagaag 32740713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 21954886 - 21954957
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||| ||||||||||||| ||||||||| | |||||||||| |||||||| ||||||||||||| |||||||    
T  21954886 ttatttaattaggatagaatgaaaaacaactcggatgagtga-ttttgggttaaaattgaccctaaatcaccc 21954957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 24320287 - 24320351
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacc 149  Q
    |||||||| ||||| ||||||||||||||||| | | |||||||||||||| |||||||||||||    
T  24320287 cacttattaaattaagatagaaggaaaaacaactcgaatgagtgatttttgagtcaaaattgacc 24320351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 40761626 - 40761559
Alignment:
Q  105 aaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| || ||| | ||||||||||||||||||||||||||| |||| || |||||||||||    
T  40761626 aaggaaaaacagttcggaggggtgatttttgggtcaaaattgaccctaaatcatccctctgaaaagaa 40761559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 41288011 - 41287917
Alignment:
Q  89 tattcaattaggatagaaggaaaaaca-attgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||   | | ||||| |||||| |||||||||||||||||||| ||||||| ||| | ||||| |||||||||    
T  41288011 tattcaattaggatagaaggaaaaaatcactcggatgggtgattattgggtcaaaattgaccctaaatcacccctctaagaagaagaagaagaag 41287917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 37376101 - 37376187
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||| ||||||||||||| |||| | | | ||||| |||| ||||||||| | |||| ||||||| |||||||||||    
T  37376101 cacttattcaattag-atagaaggaaaaataattcgaaggggtgatctttgagtcaaaatttatcctaaatcacccttctgaaaagaa 37376187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 4621433 - 4621494
Alignment:
Q  87 cttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgac 148  Q
    |||||||||||| | ||||||||||||||| | | | ||||||||||| |||||||||||||    
T  4621433 cttattcaattatggtagaaggaaaaacaactcgaaagagtgatttttaggtcaaaattgac 4621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 36719628 - 36719680
Alignment:
Q  108 gaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||| ||| | ||||||||||| ||||||||||||||| |||||||    
T  36719628 gaaaaacaattcggaggggtgatttttggatcaaaattgaccctaaatcaccc 36719680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 39707345 - 39707272
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattggga-tgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||| ||||||||||||| ||||||||| | ||| ||| ||| |||||||||||||||||||||| |||||||    
T  39707345 acttatttaattaggatagaaagaaaaacaactcggagtga-tga-ttttgggtcaaaattgaccctaaatcaccc 39707272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 15674735 - 15674785
Alignment:
Q  131 ttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  15674735 ttttaggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaa 15674785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 10094498 - 10094465
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaatt 118  Q
    ||||||||||||||||||| ||||||||||||||    
T  10094498 cacttattcaattaggataaaaggaaaaacaatt 10094465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 15674676 - 15674709
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaatt 118  Q
    |||||||||||||||||||| |||||||||||||    
T  15674676 cacttattcaattaggataggaggaaaaacaatt 15674709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 17699610 - 17699514
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  17699610 cacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcactcatctgaaaagaagaagaagaa 17699514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 32347778 - 32347875
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    ||||||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  32347778 cacttattcaattaggatagaaggaaaaaacaagtcggaggggtgatttttgggtcaaagttgaccctaaatcacccctctgaaaagaaaagaagaag 32347875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 42609201 - 42609127
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  42609201 cacttattcaattaggatagaagaaaaaacaattcggatgagtgatttttaggtcaaaattgaccctaaatcacc 42609127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 28040686 - 28040590
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||||||||| ||| ||| | |||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||    
T  28040686 cacttattcaattaggatataaggaaaaacgatttggaggggtgatttttgggtcaaaattgaccgtaaatcacccctctgaaaagaagaagaagaa 28040590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 17331385 - 17331304
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||| ||||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||||||| |||||    
T  17331385 cacttattcaattaagatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctga 17331304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 27241121 - 27241034
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| ||||||||||||||  || | |||||||||||||||||||||| | || ||||||||||| |||||||    
T  27241121 cacttattcaattaggataaaaggaaaaacaattcagaggggtgatttttgggtcaaaattgatcataaatcacccatctaaaaagaa 27241034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 43493929 - 43493842
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||| |||||||||||||||||| |||   ||||||||||| ||||||||||||||| ||||||| ||| |||||||    
T  43493929 cacttattcaattagaatagaaggaaaaacaattcggagaggtgatttttggatcaaaattgaccctaaatcacccctctaaaaagaa 43493842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 6281101 - 6281004
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||| ||||||||||||| ||||  || | |||||||||||||||||||||||| || ||||||| ||| ||||||| |||||||||    
T  6281101 cacttattcaattagaatagaaggaaaaataattcagaggggtgatttttgggtcaaaattgaccataaatcacccctctaaaaagaagaagaagaag 6281004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 33164532 - 33164613
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||| | ||||||||||||||||| ||| |||||||||||| ||||||||||||| || ||||||| |||||    
T  33164532 cacttattcaattaaggtagaaggaaaaacaattcggaggagtgatttttgagtcaaaattgaccataaatcacccctctga 33164613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 17096303 - 17096393
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa---caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||   ||| ||||| | |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  17096303 cacttattcaattaggatagaaggaaaaaaaacaactgggaggggtgattattgggtcaaaattgaccctaaatcacccctctgacaagaa 17096393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 23882180 - 23882268
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaa 173  Q
    ||||||||||||| |||||||| ||||||||||| ||||   |||||||||  ||||||||||||||| ||||||| ||||||||||||    
T  23882180 cacttattcaatttggatagaaagaaaaacaatttggattgatgatttttgaatcaaaattgaccctaaatcacccctctgaaaagaaa 23882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 26295122 - 26295196
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    |||||||||||| |||||||||||||||||| || ||| | ||||||||||| ||||||||||||||| ||||||    
T  26295122 cacttattcaataaggatagaaggaaaaacacttcggaggggtgatttttggatcaaaattgaccctaaatcacc 26295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 3740414 - 3740318
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||| |||||||||  ||||  ||||||||| ||||||||| |||||| ||||| | ||||||||||| |||||||||    
T  3740414 cacttattcaattaggatagaagg-aaaacaattcagatggatgatttttgagtcaaaattaaccctaaatcacacctctgaaaagaagaagaagaag 3740318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 7771888 - 7771957
Alignment:
Q  103 agaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  7771888 agaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaa 7771957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 34431117 - 34431045
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    ||||||||||||||  ||||||| |||||||||| | ||| ||||||||||||||||||||||||||| ||||    
T  34431117 cacttattcaattaaaatagaagaaaaaacaattcgaatgggtgatttttgggtcaaaattgaccctaaatca 34431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 178170 - 178265
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaa 180  Q
    ||||||||||||||||||| ||||||| |||| | |||   |||||||||| ||||||||||||| || ||||||   ||||||||||||||||||    
T  178170 cacttattcaattaggatataaggaaacacaactcggagaggtgatttttgagtcaaaattgaccttaaatcacctcactgaaaagaaaagaagaa 178265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 29097846 - 29097771
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| | ||||||||||||||| | ||| | ||||| ||||||||||||||||||||| |||||||    
T  29097846 cacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatctttgggtcaaaattgaccctaaatcaccc 29097771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 981095 - 981185
Alignment:
Q  91 ttcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||| ||||||||||||||||| | ||| | | |||| ||||||||||||||| |||| ||||||| ||| ||||||| ||||||||    
T  981095 ttcaattatgatagaaggaaaaacaactcggaggggcgattattgggtcaaaattgatcctaaatcacccttctaaaaagaagaagaagaa 981185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 20483243 - 20483146
Alignment:
Q  85 cacttattcaa-ttaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||| |||| ||| |||||||||||||| ||| | |||||||||||||||||||||| |||| ||||||| ||  ||||||| |||||||||    
T  20483243 cacttattcaaattagaataaaaggaaaaacaatttggagg-gtgatttttgggtcaaaattgatcctaaatcacccctccaaaaagaagaagaagaag 20483146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 6681938 - 6682013
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||  |||| |||||||||||| | | |||||||||||||||| |||| ||||| ||| |||||||    
T  6681938 cacttattcaattcagataaaaggaaaaacaactcgaatgagtgatttttgggccaaatttgactctaaatcaccc 6682013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12439698 - 12439771
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||| |||||||||| ||||||||||| ||| | ||||||||| ||||||||||  ||||| ||||||    
T  12439698 cacttattcaactaggatagaatgaaaaacaattcgga-gggtgatttttaggtcaaaattatccctaaatcacc 12439771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 39531467 - 39531551
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaaga 171  Q
    |||||||||||||| ||||||||||||| ||| | ||| |  ||||||| ||||||||||||||| || ||||||||||||| ||||    
T  39531467 cacttattcaattacgatagaaggaaaa-caactcggagggatgatttt-gggtcaaaattgaccttaaatcacccatctgagaaga 39531551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 33487098 - 33487191
Alignment:
Q  89 tattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  33487098 tattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 33487191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 3232842 - 3232748
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||    
T  3232842 ttattcaattaggatagaaggaaaaacaattcggaggggtgattttttgatcaaaattgaccctaaatcacccatctgaaaagaagaagaagaag 3232748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 424355 - 424452
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||    
T  424355 cacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgacaagaagaagaagaag 424452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 28678194 - 28678291
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||    
T  28678194 cacttattcaattatgatagaacgaaaaacaattcggacgagtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaagaag 28678291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 7995624 - 7995708
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaa 169  Q
    |||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||| ||||||| ||||||||    
T  7995624 cacttattcaattaggatagaaggaaaaacaattcggagaggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaa 7995708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 32784165 - 32784078
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||| | |||||||||    
T  32784165 cacttattcaataaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctttgaaaagaa 32784078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 20411630 - 20411534
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||| | ||| || ||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||    
T  20411630 cacttattcaatttgaataaaaagaaaaacaattcggatgggtgatttttgggtcaaaattgaccataaatcacccatctaaaaagaagaagaagaa 20411534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 29205342 - 29205255
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||| |||||||||||||||||||   | | ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  29205342 cacttattcaattatgatagaaggaaaaacaattccaaggggtgatttttgggtcaaaattgaccctaaatcacccgtctaaaaagaa 29205255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 4882423 - 4882520
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||| || ||||||||| | ||| | |||||||||||||| |||||||| ||| ||| ||||||||||||||| |||||||||    
T  4882423 cacttattcaattaggatataatgaaaaacaaatcggaggggtgatttttgggtcgaaattgactctaaatcgcccatctgaaaagaagaagaagaag 4882520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 14265341 - 14265254
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| ||||||||||||||||||||||  | ||| | |||||||||  |||||||||||||||| ||||||||||||| |||||    
T  14265341 cacttatttaattaggatagaaggaaaaacagctcggaggggtgatttttttgtcaaaattgaccctaaatcacccatctgacaagaa 14265254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 12871678 - 12871597
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    ||||||||| ||||||||| || ||||||||| | ||| | ||||||||||||||||||||||||||| ||||||| |||||    
T  12871678 cacttattcgattaggatataatgaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctga 12871597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 27534756 - 27534659
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| | ||||||||||||||| | ||| |  |||||||||||||||||||||||||| |||| || ||||| ||||| |||||||||    
T  27534756 cacttattcaattaaggtagaaggaaaaacaaatcggagggatgatttttgggtcaaaattgaccctaaatcatccctctgacaagaagaagaagaag 27534659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 42490950 - 42490853
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||| ||||||||||| ||| | ||||||||| ||||||| ||||||||| ||||||  ||||| ||||| |||||||||    
T  42490950 cacttattcaattaagatagaacgaaaaacaattcggaggggtgatttttaggtcaaacttgaccctaaatcacctctctgacaagaagaagaagaag 42490853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 45750534 - 45750438
Alignment:
Q  86 acttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||| ||||||||| |||| ||  ||| ||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||    
T  45750534 acttattcaattaggataaaaggaaaaaacaatcggattga-tgatttttgggtcaaaattgaccttaaatcacccctctgaaaagaagaagaagaag 45750438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 13488600 - 13488675
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| | | ||||||||||||| | ||||| ||||||||||||||||||| ||||||| |||||||    
T  13488600 cacttattcaattaaggtggaaggaaaaacaaatcggatgggtgatttttgggtcaaaatcgaccctaaatcaccc 13488675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 15791554 - 15791624
Alignment:
Q  87 cttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    |||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||||||| |||| ||||    
T  15791554 cttattcaattaagatataaggaaaaacaactcggatgagtgatttttgtgtcaaaattgatcctaaatca 15791624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 33125870 - 33125943
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||||||  | ||||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||    
T  33125870 cacttattcaattataaaagaaggaaaaacaatttagatgagtga-ttttgggtcaaaattgaccctaaatcacc 33125943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 37822409 - 37822471
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattga 147  Q
    ||||||||||||||||||||||||||||||||||  || | || |||||||||||||||||||    
T  37822409 cacttattcaattaggatagaaggaaaaacaattcagaagggtaatttttgggtcaaaattga 37822471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 17347655 - 17347559
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||  ||| |||||||| |||||||| | ||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||| |||||||||    
T  17347655 cacttattcctttatgatagaagaaaaaacaactcggatgggtgatttttgg-tcaaaattgaccctaaatcatccatctgacaagaagaagaagaag 17347559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 33939082 - 33939153
Alignment:
Q  101 atagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||| |||||||||||  || | ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  33939082 atagaaagaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaa 33939153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 32878764 - 32878686
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatct 164  Q
    |||||||| |||||||||||| |||||||||| | ||| |  ||||||| ||||||||||| |||||| |||||||||||    
T  32878764 cacttatttaattaggatagagggaaaaacaactcggaaggatgatttt-gggtcaaaattaaccctaaatcacccatct 32878686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 45193690 - 45193787
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||| ||| | ||| | || ||| |||||| ||||||||||||| ||| ||| ||||| ||||| |||||||||    
T  45193690 cacttattcaattaggatagaaggaaaaaacaactcggaggggt-attattgggttaaaattgaccctaaatcgcccctctgacaagaagaagaagaag 45193787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 18343671 - 18343590
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||| ||| ||||| | ||||||||||||||| | | | | |||||||||||||||||||||| |||| ||||||| |||||    
T  18343671 cactcatttaattaaggtagaaggaaaaacaaatcgaaggggtgatttttgggtcaaaattgatcctaaatcacccctctga 18343590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 4871091 - 4871187
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||| |||||||||||||| |||   ||||||| || ||||||||||| | || ||||||| ||  ||||||| |||||||||    
T  4871091 acttattcaattagaataaaaggaaaaacaattcggagtggtgatttatgagtcaaaattgatcttaaatcacccgtcaaaaaagaagaagaagaag 4871187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 42276410 - 42276327
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||| ||||| |||||||| |||||||||| ||| | |||||||| | ||||||| | |||||| ||||||| |||||||||||    
T  42276410 ttatttaattatgatagaagaaaaaacaattcggaggggtgatttt-gtgtcaaaaataaccctaaatcacccctctgaaaagaa 42276327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 44517204 - 44517157
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgattt 132  Q
    |||||||| ||||||||||||||||||||||||| ||| | |||||||    
T  44517204 cacttattgaattaggatagaaggaaaaacaattcggaagggtgattt 44517157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 14585519 - 14585432
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  14585519 cacttattcaattaggatagaaggaaaaacaatttagaggagtgatttttgggtcaaaattgactctaaatcacccctctgaaaagaa 14585432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 31270383 - 31270287
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||||||||| |||| | | | ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  31270383 cacttattcaattaggatagaaggaaaaataattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccatctaaaaagaataagaagaa 31270287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 31462818 - 31462914
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  31462818 cacttattcaattaggatataaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaa 31462914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 3457000 - 3456903
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||||| |||   ||||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||    
T  3457000 cacttattcaattaggatagaaggaaaaacaattcggagaggtgatttttggatcaaaattgaccataaatcacccctctgaaaagaagaagaagaag 3456903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 30156354 - 30156440
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  30156354 cacttattcaattaggataaaaggaaaa-caattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaa 30156440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 36691871 - 36691958
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  36691871 cacttattcaattaggatagaaggaaaaataactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgacaagaa 36691958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 53155502 - 53155589
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| |||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  53155502 cacttattgaattaggatataaggaaaaacaattcgaatgggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaa 53155589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 27189467 - 27189561
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaa 180  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||| ||||||| |||  ||||| ||||||||    
T  27189467 acttattcaattaggatagaaggaaaaacaattcggaagagtaatttttggatcaaaattgactctaaatcacccctctacaaagagaagaagaa 27189561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 1074965 - 1075062
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||||| || ||||||| ||||| ||||| |||||||||    
T  1074965 cacttattcaattagaatataaggaaaaacaactcggatgggtgatttttgggtcaaaattgaccataaatcacccctctgacaagaagaagaagaag 1075062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 48400956 - 48400859
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| || |||| |||||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||    
T  48400956 cacttattaaaatagggtagaaggaaaaacaattccgatgtgtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaagaag 48400859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 53402687 - 53402591
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||| ||| | ||||||| ||||||||    
T  53402687 cacttattgaattagaatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccttaaatcactcatttaaaaagaagaagaagaa 53402591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 34960930 - 34961017
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||| ||||||| ||||||||||  || | |||||||||||||||||||||||||||  |||||| |||||||||||    
T  34960930 cacttattcaattagaatagaagaaaaaacaattctgaggggtgatttttgggtcaaaattgaccctaagtcacccctctgaaaagaa 34961017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 36624766 - 36624853
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||  ||||||| |||||||||||    
T  36624766 cacttatttagttaggatagaaggaaaaacaattcggatgggtgatttttgggtcatgattgaccctgaatcacccctctgaaaagaa 36624853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 11819140 - 11819059
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||| | ||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||||||| |||||    
T  11819140 cacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctga 11819059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 13702044 - 13702141
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||| |||||| |||| | | | |||| |||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  13702044 cacttattcaattatgatagaaagaaaaataattcgaaggggtgacttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaag 13702141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 22485022 - 22484961
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattg 146  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  22485022 cacttattcaattaggatagaaggaaaaacaatccggaagagtgatttttgggtcaaaattg 22484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 32080830 - 32080907
Alignment:
Q  89 tattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||| | ||||||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||||||||    
T  32080830 tattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcacccatctga 32080907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 40013344 - 40013442
Alignment:
Q  85 cacttattcaattagga---tagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||   ||||||||||||||||| | ||| ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||    
T  40013344 cacttattcaattaggaggatagaaggaaaaacaattcgaatgggtgatttttgggtcaaaattgacactaaatca-ccatctgaaaagaagaagaagaa 40013442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 48652512 - 48652609
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| | ||||||||||||||| | ||| | ||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||||    
T  48652512 cacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaagttgaccctaaatcacccctctgacaagaagaagaagaag 48652609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 38527317 - 38527233
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||| ||||| |||| ||||||| ||| |||||||    
T  38527317 ttattcaattaagatagaaggaaaaacaatttggatgtgtgatttttggttcaagattgatcctaaatcacccctctaaaaagaa 38527233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 35174761 - 35174665
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||||||||||||||   | | |||||||||||||| |||||||||||  || |||| | ||||||||| ||||||||    
T  35174761 cacttattcaattaggatagaaggaaaaacaattcaaaggggtgatttttgggtcgaaattgacccttaataacccctatgaaaagaagaagaagaa 35174665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 54239090 - 54239165
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||| || ||| || |||||||    
T  54239090 cacttattcaattaggatagaaggaaaaacaattcggatgtgtgattttttgatcaaatttaaccttaaatcaccc 54239165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 4206583 - 4206669
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaaga 171  Q
    ||||||||||||||||||| | |||||||||||| ||| | ||||||||| | |||||||||||| || ||||||| ||| ||||||    
T  4206583 cacttattcaattaggatatatggaaaaacaattcggaggggtgattttttgatcaaaattgaccataaatcacccctctaaaaaga 4206669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 19645278 - 19645193
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaag 170  Q
    |||||||| |||||||| ||||| |||||||||| |||||  || ||||| ||||||||||||||||| ||||||| ||| |||||    
T  19645278 cacttatttaattaggacagaagaaaaaacaattcggatggatggtttttaggtcaaaattgaccctaaatcacccttctaaaaag 19645193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 49628159 - 49628224
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccc 150  Q
    ||||||||||| ||||||||||||||||||||||  || | ||||||||| |||||||||||||||    
T  49628159 cacttattcaactaggatagaaggaaaaacaattcagaggggtgatttttaggtcaaaattgaccc 49628224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 40883940 - 40884016
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||| ||||||||| ||||| | ||   |||||||||||||||||||||||||| |||||||    
T  40883940 cacttattcaattaggataaaaggaaaaaacaattcgaattgatgatttttgggtcaaaattgaccctaaatcaccc 40884016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 41868366 - 41868442
Alignment:
Q  85 cacttattcaattaggatagaagg-aaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||| |||||||| | |||| |||||||    
T  41868366 cacttattcaattaggatagaaggaaaaaacaactcagatgagtgatttttggatcaaaatttatcctaaatcaccc 41868442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 24483750 - 24483847
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||| |||||||||||  |||| ||||||| || |||||||||||| | | ||||||  || |||||||| |||||||||    
T  24483750 cacttattcaattatgatagaatgaaaaacaattcagatgggtgatttgtgtgtcaaaattgactccaaatcacctctcagaaaagaagaagaagaag 24483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 55090655 - 55090751
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||| ||||| | ||||||||||||||| | ||| | |||||||||||||  ||||| |||||| ||||||| ||||| ||||| ||||||||    
T  55090655 cacttatttaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggttgaaattaaccctaaatcacccctctgacaagaagaagaagaa 55090751  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 39610269 - 39610165
Alignment:
Q  85 cacttattcaattaggatagaaggaa--------aaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aag 175  Q
    ||||||||||||||||||||||||||        |||||| | ||| | |||||| ||||||||||||||||| || ||||||| ||||| ||||| |||    
T  39610269 cacttattcaattaggatagaaggaagaaaaaaaaaacaactcggaggggtgattattgggtcaaaattgaccataaatcacccctctgacaagaagaag 39610170  T
Q  176 aagaa 180  Q
    |||||    
T  39610169 aagaa 39610165  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 39429573 - 39429637
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccc 150  Q
    ||||| ||||||||| | ||||||||||||||||  |||| |||| ||||||||||||||| ||||    
T  39429573 cacttgttcaattagaaaagaaggaaaaacaattcagatgggtga-ttttgggtcaaaattcaccc 39429637  T

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Target: scaffold0312 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 6194 - 6097
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||    
T  6194 cacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctgacaagaagaagaagaag 6097  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 13570798 - 13570891
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaag 178  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||| | ||||||||||| ||| ||||||| |||||||||||||||||    
T  13570798 cacttatttaattaggatagaatgaaaaacaattgggatgaatgatttttagatcaaaattgactctaaatcacccctctgaaaagaaaagaag 13570891  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 39067761 - 39067858
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| || ||||||| ||| ||||||| |||||||||    
T  39067761 cacttattaaattaggatagaaggaaaaacaatttggaacagtgatttttgggtcaaaattgaccttaaatcacccctcttaaaagaagaagaagaag 39067858  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 13570962 - 13571018
Alignment:
Q  251 tataatgtatattgcaaagtagaactatgtggaactatattgcaaagtaattgttgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13570962 tataatgtatattgcaaagtagaactatgtggaactatattgcaaagtaattgttgt 13571018  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 37612710 - 37612623
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| ||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  37612710 cacttattcaactaggatagaaggaaaaaaaattcggaggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaa 37612623  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 10338894 - 10338990
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||||||||||| || ||||||| ||||||||||| |||||||||    
T  10338894 cacttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgcgtcaaaattgaccttaaatcaccc-tctgaaaagaataagaagaag 10338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 31202515 - 31202418
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||  |||||| ||||||||||| |||||  ||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||    
T  31202515 cacttattcaattataatagaaagaaaaacaatttggatggatgatttttgggtcaaaattgaccttaaatcacccatctaaaaagaagaagaagaag 31202418  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 24791240 - 24791336
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||| |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||| || ||||||| ||| ||||||| ||||||||    
T  24791240 cacttattgaattaggatataaggaaaaacaattcggatggatgatttttgggtcaaaattgaccataaatcacccctctaaaaagaagaagaagaa 24791336  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 12329683 - 12329596
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| |||||||||||||| | |   ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  12329683 cacttattcaattaggataaaaggaaaaacaattcgaaatggtgatttttggatcaaaattgactctaaatcacccatctgaaaagaa 12329596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 30026952 - 30027039
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||| |||||||| |||||||| | ||||| |||||||||||||||||| |||||||| ||||||| ||||| |||||    
T  30026952 cacttattcaattatgatagaagaaaaaacaactcggatgggtgatttttgggtcaaaaatgaccctaaatcacccctctgacaagaa 30027039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 2234542 - 2234639
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||| |||||||||||||||||||||| | | | ||||||||||| |||||||| |||||||||||||| | | ||||||| |||||||||    
T  2234542 cacttattcaactaggatagaaggaaaaacaattcgaaggggtgatttttggatcaaaattaaccctagatcacccttttaaaaagaagaagaagaag 2234639  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 9501647 - 9501572
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||||||||||||||||||||| |||||  |||| ||||||||||| ||||||||||||||| ||||||    
T  9501647 cacttattcaattaggatagaaggaaaaaacaattcagatgggtgatttttggatcaaaattgaccctaaatcacc 9501572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 14600773 - 14600844
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    |||||||||||||||||||| |||||||| | |||||  |||||||||||||||||||||||||| ||||||    
T  14600773 ttattcaattaggatagaagaaaaaacaactcggatggatgatttttgggtcaaaattgaccctaaatcacc 14600844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 10334231 - 10334159
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    |||||||| ||||||||||||||||||||||| |   ||||||||||||||| ||||||||||||||| ||||    
T  10334231 cacttatttaattaggatagaaggaaaaacaactcatatgagtgatttttggatcaaaattgaccctaaatca 10334159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 23971166 - 23971226
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaatt 145  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||    
T  23971166 cacttattcaattagaatagaaggaaaaacaactcggatgagtgattttttggtcaaaatt 23971226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 1810292 - 1810378
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| |||||||||||||| ||||| ||| || | | ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  1810292 cacttattgaattaggatagaagaaaaaaaaatcgg-aggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaa 1810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 30039408 - 30039482
Alignment:
Q  89 tattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatct 164  Q
    ||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||| || ||||| |||||    
T  30039408 tattcaattagaaaagaaggaaaaacaattcggatgagtga-ttttgggtcaaaattgaccataaatcactcatct 30039482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 31407823 - 31407917
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgag-tgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| || ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||| ||| |||| || |||||||||    
T  31407823 ttattcaactatgatagaaggaaaaacaattcgga-gagatgatttttgggtcaaaattgaccctaaatcacccctctaaaaataagaagaagaag 31407917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 41361789 - 41361714
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| | ||||||||||||||| | ||| | |||||||||||||||||||||||| || |||||||    
T  41361789 cacttattcaattacggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccataaatcaccc 41361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 7583851 - 7583933
Alignment:
Q  100 gatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||||    
T  7583851 gataaaaggaaaaacaactcggatgggtgatttttgggtcaaaattgatcctaaatcacccctctgacaagaagaagaagaag 7583933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 1039965 - 1040029
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacc 149  Q
    |||||||| |||||| |||||||||||| ||||| ||||| ||||||||||| ||||||||||||    
T  1039965 cacttattgaattagaatagaaggaaaaccaattcggatgggtgatttttggatcaaaattgacc 1040029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 2025281 - 2025377
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||| ||| |||||||||||| | ||| | ||||||||| |||||||||||||| || ||||||| ||| | ||||| ||||||||    
T  2025281 cacttattcaattagaataaaaggaaaaacaacttggaagggtgattttttggtcaaaattgaccataaatcacccctctaacaagaagaagaagaa 2025377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 10148004 - 10147928
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||||||| ||||| ||| | ||| | |||||| |||||||||||||||||||| |||||||    
T  10148004 cacttattcaattaggatagaagaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcaccc 10147928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 11161938 - 11161842
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||| || ||||||||| | | | | ||||||||||||||||||||||||||| || |||| ||| | ||||| |||||||||    
T  11161938 acttattcaattaggatataaagaaaaacaacttgaaggggtgatttttgggtcaaaattgaccctaaattacccctctaacaagaagaagaagaag 11161842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 24699889 - 24699790
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaa--caattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| |||||||||| ||| |||||  ||  | ||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||    
T  24699889 cacttatttaattaggatataagaaaaaaaacatctcggatgggtgatttttgggtcaaaattgaccctaaatcacccttctgacaagaagaagaagaag 24699790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 3204828 - 3204914
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||| ||| |||||| ||||| |||||||||||| ||| | || |||||||||||||||||||| ||| |||| | | ||||||||||    
T  3204828 cactcattaaattagaatagatggaaaaacaattcggagg-gtaatttttgggtcaaaattgactctaaatcatctaactgaaaagaa 3204914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 31308205 - 31308174
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaa 116  Q
    ||||||||||||||||||||||||||||||||    
T  31308205 cacttattcaattaggatagaaggaaaaacaa 31308174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 37128558 - 37128597
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatg 124  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  37128558 cacttattcaactaggatagaaggaaaaacaattcggatg 37128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 24568777 - 24568874
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    ||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  24568777 cacttattcaattaggatagaaggaaaaataattcggaagggtgatttttgggtcaaaattcaccctaaatcacccctctgaaaagaagaagaagaag 24568874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 22757151 - 22757055
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||||||||||||||| |||   |||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||    
T  22757151 cacttattcaattaggatagaaggaaaaacaattcggagtggtgatttttgagtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaa 22757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 7060381 - 7060294
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||| || |||| |||||||||||    
T  7060381 cacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttgggttaaaattgaccctaaattacccctctgaaaagaa 7060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 26742527 - 26742614
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||| |||||||    
T  26742527 cacttattcaattaagatagaaagaaaaacaattcggatgggtgatttttgggtcaaaattgatcctaaatcacccatctaaaaagaa 26742614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 31522039 - 31521952
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||| ||||||| | |||||||||    
T  31522039 cacttattcaattaggatagaaggaaaaacaattcggaggggtgatttttaggtcaaaattgaccctaaatcacccctttgaaaagaa 31521952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 26674429 - 26674332
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||||||||||||| ||||| ||| | ||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  26674429 cacttattcaattatgatagaaggaaaagcaatttggaggggtgatttttaggtcaaaattgatcctaaatcacccatctgaaaagaagaagaagaag 26674332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 43244445 - 43244539
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    ||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||| ||||||| |||  ||| |||||||||||    
T  43244445 cacttattcaattaggatagaaggaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccctct--aaaaaaaagaagaag 43244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 27394886 - 27394790
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||| |||  ||| | ||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||    
T  27394886 acttattcaattaggatagaaggaaaaataatccggaagggtgatttttgggtcaaaattgaccctaaatcacccctgtgaaaagaagaagaagaag 27394790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 394338 - 394413
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||    
T  394338 cacttattgaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaaaattgaccctaaatcaccc 394413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 478076 - 478162
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| || ||||||| ||| |||||||    
T  478076 cacttattcaattaggatataaggaaaaacaattcggatg-gtgatttttgggtcaaaattgaccataaatcacccctctaaaaagaa 478162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 44757106 - 44757193
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||| || ||||||| ||||| |||||    
T  44757106 cacttattcaattaggatagaaggaaaaacaactcgaatgggtgatttttgggtcaaaattgaccttaaatcacccctctgataagaa 44757193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 24825706 - 24825609
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| |||| ||||||| ||| | ||||| |||||||||    
T  24825706 cacttattcaattaggatagaaggaaaaacaactcggaggagtgatttttaggtcaaaattgatcctaaatcacccctctaacaagaagaagaagaag 24825609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 13965617 - 13965545
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    |||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||| ||||    
T  13965617 cacttattcaattaggatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattgaccctaaatca 13965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 20399967 - 20400063
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||| |||| ||||| || || ||||||||||||||||||||||||||| ||| ||| ||| ||||||| ||||||||    
T  20399967 cacttattcaattaggatagaagaaaaagcaattcgggtgggtgatttttgggtcaaaattgaccctaaatcgcccttctaaaaagaagaagaagaa 20400063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 24100196 - 24100101
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    |||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||| |||| ||||||| ||| |||| |||||||||||    
T  24100196 cacttattcaattacgatagaaggaaaaacaattcggatgggtaatttttggttcaaaattgatcctaaatcacccctct-aaaaaaaaagaagaag 24100101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 8712587 - 8712490
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||| |||| ||||||||||||||||||||||  || | ||||||||||||||||||||||||||| ||||||| | | ||||||| |||||||||    
T  8712587 cacttactcaactaggatagaaggaaaaacaattatgaggggtgatttttgggtcaaaattgaccctaaatcacccctgtaaaaagaagaagaagaag 8712490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 7083880 - 7083976
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||| |||||||||||||||||||   | | ||||||||||| ||||||||||||||| || | |||||||||||||| ||||||||    
T  7083880 cacttattcaattatgatagaaggaaaaacaattcataggggtgatttttggatcaaaattgaccctaaattatccatctgaaaagaagaagaagaa 7083976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 19745443 - 19745371
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  19745443 ttattcaattaggataaaagcaaaaacaattcggatgaatgatttttgggtcaaaattgatcctaaatcaccc 19745371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 19794363 - 19794435
Alignment:
Q  88 ttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  19794363 ttattcaattaggataaaagcaaaaacaattcggatgaatgatttttgggtcaaaattgatcctaaatcaccc 19794435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 51152182 - 51152107
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||| || |||||||    
T  51152182 cacttattaaattaggatagaaggaaaaacaattcggaggggtgatttttgggtcaatattgaccntaaatcaccc 51152107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 29268841 - 29268928
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||||||||||| |||||||||||| | ||| | |||||||| ||||||||||||||| || ||||||| ||||| |||||    
T  29268841 cacttattcaattaggataaaaggaaaaacaactcggaggggtgattttagggtcaaaattgaccttaaatcacccctctgacaagaa 29268928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 25658224 - 25658127
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| |||||||| |||||||||||||||| |||   |||||||||| ||||||||| |||||| ||||||| ||| ||||||| |||||||||    
T  25658224 cacttattaaattaggaaagaaggaaaaacaatttggagaggtgatttttgagtcaaaattaaccctaaatcacccctctaaaaagaagaagaagaag 25658127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 626612 - 626698
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||| |||||||| ||||| ||||  |||| ||||||||||||||||||||  ||||| ||||||| |||||||||||    
T  626612 cacttattcaattatgatagaag-aaaaataattcagatgggtgatttttgggtcaaaattagccctaaatcacccctctgaaaagaa 626698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 7861269 - 7861356
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||| |||||||||||||||||||| ||||  ||   ||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  7861269 cacttatttaattaggatagaaggaaaaataattcagagtggtgatttttgggtcaaaattgattctaaatcacccatctgacaagaa 7861356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 22049469 - 22049543
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||||||||||||||||||||| | | | |||| ||||||||||||||| |||||| |||||||    
T  22049469 cacttattcaattaggatagaaggaaaaacaattcgaaagggtga-ttttgggtcaaaattaaccctaaatcaccc 22049543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 36124416 - 36124471
Alignment:
Q  90 attcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaatt 145  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  36124416 attcaattaagataggaggaaaaacaattgggatgagtgatttttggatcaaaatt 36124471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 38944211 - 38944278
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacccta 152  Q
    ||||||||||| || ||||||||||||||||||| ||| | |||||||||||| ||||||||||||||    
T  38944211 cacttattcaactacgatagaaggaaaaacaatttggaggggtgatttttgggccaaaattgacccta 38944278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 30202095 - 30201998
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| |||| |||||||||||| | | | | ||||||||||| |||||||||||| || ||||||| ||||| ||||| |||||||||    
T  30202095 cacttattcaattaagataaaaggaaaaacaactagaaggggtgatttttggatcaaaattgaccttaaatcacccctctgacaagaagaagaagaag 30201998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 39837652 - 39837555
Alignment:
Q  85 cacttattcaattaggatagaagg-aaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||| |||| ||||| || | | | | ||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||    
T  39837652 cacttattcaattaggataaaagggaaaaaaaaatcgaaggggtgatttttgggtcaaaattgacgctaaatcacccctctgaaaagaagaagaagaa 39837555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 42197609 - 42197513
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| |||||||||||||||||||| |||| |||  ||||||||||  ||||||||| |||||| ||||||| | ||||||||| |||||||||    
T  42197609 cacttattaaattaggatagaaggaaaaataattcgga-aagtgatttttttgtcaaaattaaccctaaatcacccctatgaaaagaataagaagaag 42197513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 6911737 - 6911641
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||| | ||||||||||||||| | |||   ||||||||||| ||||||||||||||| ||||||| ||| | ||||| ||||||||    
T  6911737 cacttattcaattaaggtagaaggaaaaacaaatcggagaggtgatttttggatcaaaattgaccctaaatcacccctctaacaagaagaagaagaa 6911641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 5814403 - 5814330
Alignment:
Q  86 acttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    ||||||||||||| ||||||||| ||||||| | ||| |  |||||||||| ||||||||||||||| ||||||    
T  5814403 acttattcaattaagatagaagggaaaacaacttggagggatgatttttggatcaaaattgaccctaaatcacc 5814330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 7084263 - 7084182
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||| | ||||||||||||||| | ||| |  | ||||||||||||||||||| |||| ||||||| |||||    
T  7084263 cacttattcaattaaggtagaaggaaaaacaaatcggaagcataatttttgggtcaaaattgaacctaaatcacccctctga 7084182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 11210377 - 11210474
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| ||| | |||||||| |||| ||| | ||||||||| || |||||||||||||| ||||||| |||  |||||| |||||||||    
T  11210377 cacttattcaattatgatgggaggaaaaataattcggaggggtgatttttagggcaaaattgaccctaaatcacccctctacaaagaagaagaagaag 11210474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 29922894 - 29922795
Alignment:
Q  85 cacttattcaattaggatagaagg---aaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||||||| |   |||||||| | ||| | |||||| || ||||||||||||||||| ||||||  ||||| ||||| ||||||||    
T  29922894 cacttattcaattaggatagaaagaaaaaaaacaacttggaggggtgattattaggtcaaaattgaccctaaatcacctctctgacaagaagaagaagaa 29922795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 20887819 - 20887883
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacc 149  Q
    |||||||| ||||| |||||||  || || |||| ||||| ||||||||||||||||||||||||    
T  20887819 cacttattgaattaagatagaaaaaataataattcggatgggtgatttttgggtcaaaattgacc 20887883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 28837128 - 28837067
Alignment:
Q  89 tattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacccta 152  Q
    ||||| ||||||||||||||||||||||   ||||| ||||||||| |||||||||||| ||||    
T  28837128 tattcgattaggatagaaggaaaaacaa--cggatgggtgattttttggtcaaaattgatccta 28837067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 50801274 - 50801214
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaatt 145  Q
    ||||||||||||||||||| ||||||||| |||| ||| |||| |||||| | ||||||||    
T  50801274 cacttattcaattaggataaaaggaaaaataattcggaggagttatttttagatcaaaatt 50801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 39523466 - 39523400
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||| |||||||||||||         |||||||||||||||||||||| ||| |||||||    
T  39523466 cacttattcaattaggataaaaggaaaaacaat---------tgatttttgggtcaaaattgactctaaatcaccc 39523400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12717182 - 12717255
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    |||||||| |||||||||||||| |||||||| | ||| |  ||| |||||||||||||||||| ||| ||||||    
T  12717182 cacttatttaattaggatagaagaaaaaacaagtcggacggatga-ttttgggtcaaaattgactctaaatcacc 12717255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 43493351 - 43493384
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaatt 118  Q
    |||||||||||||| |||||||||||||||||||    
T  43493351 cacttattcaattaagatagaaggaaaaacaatt 43493384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 45351134 - 45351203
Alignment:
Q  85 cacttattcaa-ttaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgacccta 152  Q
    ||||||||||| |||| ||| ||||||||| ||||| ||| | ||||||||||| |||||||||||||||    
T  45351134 cacttattcaaattagaataaaaggaaaaaacaattcggaggggtgatttttggatcaaaattgacccta 45351203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 45360613 - 45360682
Alignment:
Q  85 cacttattcaa-ttaggatagaaggaaaaa-caattgggatgagtgatttttgggtcaaaattgacccta 152  Q
    ||||||||||| |||| ||| ||||||||| ||||| ||| | ||||||||||| |||||||||||||||    
T  45360613 cacttattcaaattagaataaaaggaaaaaacaattcggaggggtgatttttggatcaaaattgacccta 45360682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 3159099 - 3159028
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    |||||||| ||||| ||||||||||||||||| | |||  ||||| |||||||| ||| ||||||||| ||||    
T  3159099 cacttatttaattatgatagaaggaaaaacaactcggaatagtga-ttttgggtaaaagttgaccctaaatca 3159028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 15590143 - 15590239
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    ||||||||||||||||||||||| ||||||||||  || | ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  15590143 cacttattcaattaggatagaagaaaaaacaattcagaggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaa 15590239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 29927447 - 29927540
Alignment:
Q  89 tattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||||    
T  29927447 tattcaattaggatagaaggaaaaacaacttggaggagtgatttttgggtcaaaattgaccataaatcactcatctgacaagaagaagaagaag 29927540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 21507872 - 21507959
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    ||||||||||| |||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||| ||||||| ||| |||||||    
T  21507872 cacttattcaactaggatagaaggaaaaacaatttggaggggtgatgtttgggtcaaaattgaccctaaatcacccctctaaaaagaa 21507959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 6419922 - 6420019
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||||||||||||||||||||| |  || | ||||||||||| ||||||||||||||| ||||||| ||||| ||||| |||||||||    
T  6419922 cacttattcaattaggatagaaggaaaaacaactcagaggggtgatttttggatcaaaattgaccctaaatcacccctctgacaagaagaagaagaag 6420019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 8693721 - 8693820
Alignment:
Q  85 cacttattcaattagga---tagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||||   ||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||||| ||| ||||||| ||||||||    
T  8693721 cacttattcaattaggaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgaccttaaatcacccctctaaaaagaagaagaagaa 8693820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 14783235 - 14783307
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatca 157  Q
    ||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||    
T  14783235 cacttattcaactaggatagaaggaaaaacaattcggaggcgtgatttttgggtcaaaattgaccctaaatca 14783307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 31937483 - 31937564
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaa 167  Q
    ||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||| |||||||| ||||||| ||||||    
T  31937483 cacttattcaattaggatagaag-aaaaacaattcggaggggtgatttttgggtcaaaactgaccctaaatcacccttctgaa 31937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 12481434 - 12481531
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||||||| | ||||||||||||||| | ||| | |||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||||    
T  12481434 cacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgatcctaaatcacccctctgacaagaagaagaagaag 12481531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 23654307 - 23654210
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||||| ||| | ||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||  ||||| ||||| |||||||||    
T  23654307 cacttattcagttaaggtagaaggaaaaacaaatcggatgggtgatttttgggtcaaaattgaccctaaatcacctctctgacaagaagaagaagaag 23654210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 4085060 - 4085000
Alignment:
Q  100 gatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||||||||||||| ||| |  |||||||| ||||||||||||||||| |||||||    
T  4085060 gatagaaggaaaaacaattcggaaggatgatttttcggtcaaaattgaccctaaatcaccc 4085000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 35219968 - 35220042
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||| ||| |||||||||||||| ||| | ||| | |||||||||| |||||||||||||||| |||||||    
T  35219968 cacttattcgattcggatagaaggaaaa-caacttggaggggtgatttttgagtcaaaattgaccctaaatcaccc 35220042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 4921945 - 4922021
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaat--tgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||| |||||||||||||| | |  ||||| | || |||||||||||||||||||||||| |||||||    
T  4921945 cacttattcaattaagatagaaggaaaaaaactactgggaggggt-atttttgggtcaaaattgaccctaaatcaccc 4922021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 6296313 - 6296412
Alignment:
Q  85 cacttattcaattaggatagaagg-aaaaacaattgggatgagtga--tttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||| ||||||| |||||||||| ||| || |||  ||||| |||||||||| || ||| ||||||| ||| ||||||| ||||||||    
T  6296313 cacttattcaattagggtagaaggaaaaaacaattcggaagaatgatttttttaggtcaaaattaactctaaatcacccctctaaaaagaagaagaagaa 6296412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 6303123 - 6303222
Alignment:
Q  85 cacttattcaattaggatagaagg-aaaaacaattgggatgagtga--tttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaa 180  Q
    |||||||||||||||| ||||||| |||||||||| ||| || |||  ||||| |||||||||| || ||| ||||||| ||| ||||||| ||||||||    
T  6303123 cacttattcaattagggtagaaggaaaaaacaattcggaagaatgatttttttaggtcaaaattaactctaaatcacccctctaaaaagaagaagaagaa 6303222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 2304874 - 2304963
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaa 174  Q
    |||||||||||||| || |||||| ||||||| |  || |  |||||||||||||||||| || |||| ||||||| ||| | |||||||    
T  2304874 cacttattcaattatgacagaagggaaaacaactcagagggttgatttttgggtcaaaatcgatcctaaatcacccctctaacaagaaaa 2304963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 35139 - 35065
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacc 159  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||    
T  35139 cacttattcaattaggatagaaggaaaaacaactcggatgggtgatttttgggtcaaaattgaccctaaatcacc 35065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 74221 - 74132
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaa 174  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||| ||||| | |||||||| ||||    
T  74221 cacttattcaattaggatagaaggaaaaacaattcggatgggtgatttttgggtcaaaattgattctaaatcactcctctgaaaaaaaaa 74132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 1150 - 1231
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctga 166  Q
    |||||||||||||||| ||||||||||||||||| | | | |||||||||||||||||||||||| || ||||||| |||||    
T  1150 cacttattcaattagggtagaaggaaaaacaattcgcaggggtgatttttgggtcaaaattgaccttaaatcacccctctga 1231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 404322 - 404409
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa 172  Q
    |||||||||||||||||||| | ||||||| ||| ||||| ||||||||||| |||||||||||| || ||| ||| |||||||||||    
T  404322 cacttattcaattaggatagcaagaaaaactattcggatgggtgatttttggatcaaaattgaccttaaatcgcccctctgaaaagaa 404409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 13337 - 13409
Alignment:
Q  109 aaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaaaagaagaag 181  Q
    |||||||||| ||| | ||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  13337 aaaaacaattcggaggggtgatttttggatcaaaattgaccctaaatcacctctctgaaaagaaaagaagaag 13409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 7188 - 7255
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgacccta 152  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||| | |||||||    
T  7188 cacttattcaattaggataaaaggaaaaacaattcggaggggtgatttttgggtcaaattggacccta 7255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 2959 - 2882
Alignment:
Q  85 cacttattcaattaggatagaagga--aaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    |||||||||||||||||||||||||  ||||||| | ||| | |||||| |||||||||||||||||||| |||||||    
T  2959 cacttattcaattaggatagaaggaaaaaaacaactcggaggggtgattattgggtcaaaattgaccctaaatcaccc 2882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 2481 - 2555
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcaccc 160  Q
    ||||||||| |||| ||||||||||||||||| |  || | |||||||||||||||||| |||||||| |||||||    
T  2481 cacttattcgattatgatagaaggaaaaacaactcagagg-gtgatttttgggtcaaaaatgaccctaaatcaccc 2555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 4131 - 4227
Alignment:
Q  85 cacttattcaattaggatagaaggaaaaacaattgggatgagtgatttttgggtcaaaattgaccctagatcacccatctgaaaagaa-aagaagaag 181  Q
    |||||||| ||||||||||||||||| | ||| |   | |||||||||||| |||||||||||||||| |||| || ||||| ||||| |||||||||    
T  4131 cacttatttaattaggatagaaggaaga-caactcaaaggagtgatttttgtgtcaaaattgaccctaaatcagccttctgacaagaagaagaagaag 4227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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