View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21181_low_5 (Length: 470)

Name: NF21181_low_5
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21181_low_5
NF21181_low_5
[»] chr5 (6 HSPs)
chr5 (136-214)||(36955558-36955636)
chr5 (397-453)||(36955762-36955818)
chr5 (243-284)||(36955666-36955707)
chr5 (245-284)||(34764015-34764054)
chr5 (136-172)||(31193966-31194002)
chr5 (136-172)||(31194229-31194265)
[»] chr8 (3 HSPs)
chr8 (120-172)||(31547581-31547633)
chr8 (245-284)||(33368121-33368160)
chr8 (136-180)||(6911302-6911346)
[»] chr4 (2 HSPs)
chr4 (120-172)||(26297324-26297376)
chr4 (136-172)||(9551489-9551525)
[»] chr2 (5 HSPs)
chr2 (120-172)||(33491330-33491382)
chr2 (245-284)||(11741290-11741329)
chr2 (120-166)||(8237860-8237906)
chr2 (136-172)||(4371455-4371491)
chr2 (136-172)||(22563211-22563247)
[»] chr1 (3 HSPs)
chr1 (126-170)||(13946934-13946978)
chr1 (245-284)||(13021046-13021085)
chr1 (140-172)||(34622593-34622625)
[»] scaffold0311 (1 HSPs)
scaffold0311 (245-284)||(9267-9306)
[»] chr3 (4 HSPs)
chr3 (245-284)||(53881218-53881257)
chr3 (126-172)||(46883425-46883471)
chr3 (136-172)||(38499820-38499856)
chr3 (136-172)||(38500085-38500121)
[»] chr7 (2 HSPs)
chr7 (136-172)||(19318483-19318519)
chr7 (136-172)||(25048288-25048324)
[»] chr6 (1 HSPs)
chr6 (120-172)||(33277316-33277368)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 36955558 - 36955636
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaacttaatgaaaagagtgaatgttcagtgtctttttaaattttgag 214  Q
    ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  36955558 taaatagagcttagcctaaatggagcgtacccaaactcaatgaaaagagtgaattttcagtgtctttttaaattttgag 36955636  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 36955762 - 36955818
Alignment:
Q  397 aatgacacatagatgtattaatgtttgcaacttctcacatggactacacttaaatct 453  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  36955762 aatgacacatagatgtattaatgtttgcagcttctcacatggactgcacttaaatct 36955818  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 36955666 - 36955707
Alignment:
Q  243 agcttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  36955666 agcttttggcagttttcatatttcagtttttaaaataataaa 36955707  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 34764054 - 34764015
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  34764054 cttttggcagtttccgtttttcagtttttaaaacaataaa 34764015  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 31194002 - 31193966
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  31194002 taaatggagcttagcctaaatggagcatacccgaact 31193966  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 31194229 - 31194265
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  31194229 taaatggagcttagcctaaatggagcatacccgaact 31194265  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 31547633 - 31547581
Alignment:
Q  120 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||  ||||||||||||||||||||||||||| || |||||||    
T  31547633 tcttgaatccaaactctaaatggagcttagtctaaatggagcatatccgaact 31547581  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 33368160 - 33368121
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  33368160 cttttggcagttttcgtttttcagtttttaaaacaataaa 33368121  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 6911302 - 6911346
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaacttaatgaaa 180  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  6911302 taaatggagcttagcctaaattgagcgtacccgaactcaatgaaa 6911346  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 26297376 - 26297324
Alignment:
Q  120 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 172  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| ||||| ||||    
T  26297376 tcttgcatccaaaccctaaatggagcttagcctaaatggagcatacccaaact 26297324  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 9551489 - 9551525
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  9551489 taaatggagtttagtctaaatggagcatacccgaact 9551525  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 33491382 - 33491330
Alignment:
Q  120 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 172  Q
    ||||| ||||||| |||||||||||||||| ||||||||| | ||||||||||    
T  33491382 tcttgcatccaaaccctaaatggagcttagcctaaatggaacatacccgaact 33491330  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 11741329 - 11741290
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  11741329 cttttggcagtttccgtttttcagtttttaaaacaataaa 11741290  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 8237906 - 8237860
Alignment:
Q  120 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacc 166  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||    
T  8237906 tcttgcatcctaatcctaaatggagcttagcctaaatggagcatacc 8237860  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 4371491 - 4371455
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  4371491 taaatggagcttagcctaaatggagcatacccgaact 4371455  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 22563247 - 22563211
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  22563247 taaatggagcttagcctaaatggagcatacccgaact 22563211  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 13946978 - 13946934
Alignment:
Q  126 atccaaatcctaaatggagcttagtctaaatggagcgtacccgaa 170  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||    
T  13946978 atccaaaccctaaatggagcttagcctaaatggagcatacccgaa 13946934  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 13021046 - 13021085
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  13021046 cttttggcagtttccgtttttcagtttttaaaacaataaa 13021085  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 34622593 - 34622625
Alignment:
Q  140 tggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||||||||||| ||||||||||    
T  34622593 tggagcttagtctaaatggagcatacccgaact 34622625  T

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Target: scaffold0311 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 9306 - 9267
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  9306 cttttggcagtttccgtttttcagtttttaaaacaataaa 9267  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 53881257 - 53881218
Alignment:
Q  245 cttttggcagttttcgtatttcagtttttaaaacaataaa 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  53881257 cttttggcagtttccgtttttcagtttttaaaacaataaa 53881218  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 46883471 - 46883425
Alignment:
Q  126 atccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 172  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  46883471 atccaaaccctaaatggagtttagcctaaatggagcatacccgaact 46883425  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 38499856 - 38499820
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  38499856 taaatggagcttagcctaaatggagcatacccgaact 38499820  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 38500085 - 38500121
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  38500085 taaatggagcttagcctaaatggagcatacccgaact 38500121  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 19318483 - 19318519
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  19318483 taaatggagcttagcctaaatggagcatacccgaact 19318519  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 25048288 - 25048324
Alignment:
Q  136 taaatggagcttagtctaaatggagcgtacccgaact 172  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  25048288 taaatggagcttagcctaaatggagcatacccgaact 25048324  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 33277368 - 33277316
Alignment:
Q  120 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 172  Q
    ||||| ||||||| |||||||| || |||| ||||||||||| ||||||||||    
T  33277368 tcttgcatccaaaccctaaatgaagtttagcctaaatggagcatacccgaact 33277316  T

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