View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_low_8 (Length: 389)
Name: NF21181_low_8
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 34752620 - 34752251
Alignment:
| Q |
1 |
aatggactgcataattactaaataccaatggttctcatattgtgattttgtttttgtttaatatgtaaattcttgtatgtttggattcgcggtgagttgg |
100 |
Q |
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| T |
34752620 |
aatggactgcataattactaaataccaatgattctcatattgggattttgtttttgtttaatatgtaaattcttgtatgtttggattcgcggtgagttgg |
34752521 |
T |
|
| Q |
101 |
gtagaatcatcgtgagccaccatgattttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgtacgtgattttg |
200 |
Q |
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| T |
34752520 |
gtagaatcatcgtga----------ttttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgtacgtgattttg |
34752431 |
T |
|
| Q |
201 |
atcatgcacaaaataaacaaagcattctttctttaagtggatgagcg-acctacaaaatcaaattttagtaccaaattgttgggaaattgggaataactt |
299 |
Q |
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| T |
34752430 |
atcatgcacaaaataaacaaagcattctttctttaagtggatgagcggacctacaaaatcaaattttagtaccaaattgttgggaaattgggactaactt |
34752331 |
T |
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| Q |
300 |
tgtattaagttattaagaatgactacattgtaaagattggtaaaaaagaaagggtaactaacatggtctatgtgatgatg |
379 |
Q |
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| T |
34752330 |
tgtattaagttattaagaatgactacattgtaaagattggtaaaaaagaaagggtaactaacatggtctatgtgatgatg |
34752251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 27664419 - 27664451
Alignment:
| Q |
113 |
tgagccaccatgattttgcaaaaactacacttt |
145 |
Q |
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| T |
27664419 |
tgagccaccatgattttgcaaaaactacacttt |
27664451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 50298352 - 50298270
Alignment:
| Q |
126 |
ttttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgtacgtgattttgatcatgca |
208 |
Q |
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||||| ||||| || ||||||| || |||| |||||||||||||| |||||||||| |||| | ||||||||| | |||||| |
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| T |
50298352 |
ttttgtaaaaagtatactttagagcttcaacgaaatcagtgtcacggtgattttgttaaattctccgtgattttaaacatgca |
50298270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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