View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21182_high_1 (Length: 420)
Name: NF21182_high_1
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 212 - 420
Target Start/End: Original strand, 28743417 - 28743627
Alignment:
| Q |
212 |
gcttgtaggaatttcaaggttatagtaataa--ctatgaattgaagaaatgacacatgaaatgaatgtctctttcaactaataaatatttgttggatatg |
309 |
Q |
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| T |
28743417 |
gcttgtaggaatttcaaggttatagtaataatgctatgacttgaagaaatgacacatgaaatgaatgtctcttttaactaataaatatttgttggatatg |
28743516 |
T |
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| Q |
310 |
agggatttaagcttttgtaaggcttcatttaaatcttcagctccattggtgttaggtagcttatgtgctcatttaacacccaccaataatattaacttag |
409 |
Q |
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| T |
28743517 |
agggatttaagcttttgtaaggcttcatttaaatcttcagctccattggtgttaggtagcttatgtgctcatttaacacccaccaataatattaacttag |
28743616 |
T |
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| Q |
410 |
cataagatatt |
420 |
Q |
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||||||||||| |
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| T |
28743617 |
cataagatatt |
28743627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 28743058 - 28743268
Alignment:
| Q |
1 |
atgcgaagtttgtttcttactttaaaataaaatattattatgattttaatttgaatattagttggactatttgtaagattcgctagnnnnnnnncttctt |
100 |
Q |
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| T |
28743058 |
atgcgaagtttgtttcttactttaaaataaaatatcattatgattttaatttgaatatttgttagactatttgtaagattggctagttttttttcttctt |
28743157 |
T |
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| Q |
101 |
aattttaggagtgtnnnnnnnntaagtgattgcaatacaaagtacaaacacaaaaaatcaaccaattttgtcatcgtatctggcttgaataatataaacc |
200 |
Q |
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| T |
28743158 |
aattttaggagtgtaaaaaaaataagtgattgcaatacaaagtacaaacacaaaaaatcaaccaatattgtcatcgtatctggcttgaataatataaacc |
28743257 |
T |
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| Q |
201 |
agatcttttat |
211 |
Q |
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| T |
28743258 |
agatcttttat |
28743268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 416
Target Start/End: Original strand, 28764599 - 28764796
Alignment:
| Q |
224 |
ttcaaggttatagtaataa--ctatgaattgaagaaatgacacatgaaatgaatgtctctttcaact----aataaatatttgttggatatgagggattt |
317 |
Q |
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|||||||||||||||| || ||| |||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| |||| || |||||||| |
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| T |
28764599 |
ttcaaggttatagtaacaatactaagaattgaagaaatgacacatgaaaagaatgtctattttaacttactaataaatatttgctggaaataagggattt |
28764698 |
T |
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| Q |
318 |
aagcttttgtaaggcttcatttaaatcttcagctccattggtgttaggtagcttatgtgctcatttaacacccaccaataatattaacttagcataaga |
416 |
Q |
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| T |
28764699 |
aagctttggtaagacttcctttaaatcttcagctccattgatatcaggtagcttatgtgctcctttaacagctactaataatattatc-tagcataaga |
28764796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 28771559 - 28771624
Alignment:
| Q |
311 |
gggatttaagcttttgtaaggcttcatttaaatcttcagctccattggtgttaggtagcttatgtg |
376 |
Q |
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| T |
28771559 |
gggatttaagcttttgcaaagcttcctttaaatcttcagctgccttcatgttaggtagctcatgtg |
28771624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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