View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21182_high_2 (Length: 402)
Name: NF21182_high_2
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 33302052 - 33302452
Alignment:
| Q |
1 |
gtcggtcaatttagtcgctcaaatttttaaaataacattttagtccttgaatttaaaaatatcaaccgatttagtcattttctcaaattttgtatcagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33302052 |
gtcggtcaatttagtcgctcaaatttttaaaataacattttagtccttgaatttaaaaatatcaaccgatttagtcattttctataattttgtatcagaa |
33302151 |
T |
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| Q |
101 |
ttttaaagattctatgcttgttttgatgcaagaaaatactacttaagtcaatatgtacgtcttctattgttctttactatataaatattttgatggaggg |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302152 |
ttttaaagattctatgcttgttttgatgcaggaaaatactacttaagtcaatacttacgtcttctattgttctttactatataaatattttgatggaggg |
33302251 |
T |
|
| Q |
201 |
agtagattgattgtttttcaatttaagggactaaagtgttaatttgcaaatatgagggattaaattgatcaagccttataattccaaatagtaaaatgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33302252 |
agtagattgattgtttttcaatttaagggactaaaatgttattttgcaaatatgagggattaaa-tgatcaagccttataattccaaatagtaaaatgca |
33302350 |
T |
|
| Q |
301 |
tatttaatcaaaccaaaaaacacactaccaaagtatattattatagttgaatcatacctaatgcctctaataactgcatgataaccatcacaaacgacac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302351 |
tatttaatcaaaccaaaaaacacactaccaaagtatactattatagttgaatcatacctaatgcctctaataactgcatgataaccatcacaaacgacac |
33302450 |
T |
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| Q |
401 |
ca |
402 |
Q |
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|| |
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| T |
33302451 |
ca |
33302452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 33250465 - 33250511
Alignment:
| Q |
356 |
acctaatgcctctaataactgcatgataaccatcacaaacgacacca |
402 |
Q |
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| T |
33250465 |
acctaatgcctctaataactgcaagatatccatcacaaaccacacca |
33250511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 33270637 - 33270683
Alignment:
| Q |
356 |
acctaatgcctctaataactgcatgataaccatcacaaacgacacca |
402 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
33270637 |
acctaatgcctctaataactgcaagatatccatcacaaaccacacca |
33270683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 21148755 - 21148660
Alignment:
| Q |
56 |
aaaatatcaaccgatttagtcattttctcaaattttgtatcagaattttaaagattctatgcttgttttgatgcaagaaaatactacttaagtcaa |
151 |
Q |
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|||||||||| | ||||||||||||| |||| || | ||||| |||||||||| || |||| |||||||||| |||||||| |||| ||||||||| |
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| T |
21148755 |
aaaatatcaatcaatttagtcattttatcaatttctttatcacaattttaaaggttttatgtttgttttgattcaagaaaacactatttaagtcaa |
21148660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 34726588 - 34726671
Alignment:
| Q |
74 |
gtcattttctcaaattttgtatcagaattttaaagattctatgcttgttttgatgcaagaaaatactacttaagtcaatatgta |
157 |
Q |
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|||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
34726588 |
gtcattttttcaaattttccatctcaatttaaaaggttctatgcttgttttgatgcagcaaaagactatttaagtcaatatgta |
34726671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 2420027 - 2419882
Alignment:
| Q |
18 |
ctcaaatttttaaaataacattttagtc-cttgaatttaaaaatatcaaccgatttagtcattttctcaaattttgtatcagaattttaaagattctatg |
116 |
Q |
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||||||||| | ||||| || ||||||| ||| |||||||||||||||| | |||||||| |||| |||||||||| | || || ||||||| || || |
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| T |
2420027 |
ctcaaatttgtgaaatagcaatttagtctcttaaatttaaaaatatcaatcaatttagtctttttttcaaattttgcaccacaa-tttaaaggttttaca |
2419929 |
T |
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| Q |
117 |
cttgttttgatgcaagaaaatactacttaagtcaatatgtacgtctt |
163 |
Q |
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||||||||||||||| |||| |||| |||| || ||||||| ||||| |
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| T |
2419928 |
cttgttttgatgcaacaaaagactatttaattctatatgtatgtctt |
2419882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 41513910 - 41513823
Alignment:
| Q |
183 |
aaatattttgatggagggagtagattgattg---tttttcaatttaagggactaaagtgttaatttgcaaatatgagggattaaattg |
267 |
Q |
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|||||||||||||||| || || |||||||| ||||||||||||||||||||| || || ||||||||| ||| ||| ||||||| |
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| T |
41513910 |
aaatattttgatggagagactaaattgattgatatttttcaatttaagggactaacttgctattttgcaaatttgaaggactaaattg |
41513823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 32710267 - 32710367
Alignment:
| Q |
30 |
aaataacattttagtccttgaattt-aaaaatatcaaccgatttagtcattttctcaaattttgtatcagaattttaaagattctatgcttgttttgatg |
128 |
Q |
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||||| || |||||||||| || || ||||||||||| | |||||||||||| | ||||||||| ||| ||||| |||| |||||| ||| |||||||| |
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| T |
32710267 |
aaatagcaatttagtcctttaaattgaaaaatatcaaacattttagtcatttt-ttaaattttgtctcacaatttgaaaggttctatacttattttgatg |
32710365 |
T |
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| Q |
129 |
ca |
130 |
Q |
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|| |
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| T |
32710366 |
ca |
32710367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 13054340 - 13054464
Alignment:
| Q |
3 |
cggtcaatttagtcgctcaaatttttaaaataacattttagtccttgaatttaaaaatatcaaccgatttagtcattttctcaaattttgtatcagaatt |
102 |
Q |
| |
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|||||||||||||| ||||||| | | ||||| || |||||| || |||| ||||||||||| | |||||||||||| | ||||||| | || |||| |
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| T |
13054340 |
cggtcaatttagtccctcaaatatgtgaaatagcaatttagt--ttaaattgaaaaatatcaaacattttagtcatttt-ttaaattttatcccacaatt |
13054436 |
T |
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| Q |
103 |
ttaaagattctatgcttgttttgatgca |
130 |
Q |
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|||||| |||||||||| |||||||||| |
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| T |
13054437 |
ttaaaggttctatgcttattttgatgca |
13054464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 34069214 - 34069128
Alignment:
| Q |
78 |
ttttctcaaattttgtatcagaattttaaagattctatgcttgttttgatgcaagaaaatactacttaagtcaatatgtacgtcttc |
164 |
Q |
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|||| |||||||||||| || ||||||||| | || | |||||||||||||| ||| |||| ||||||| |||||||||||||| |
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| T |
34069214 |
ttttttcaaattttgtaccacaattttaaacagattaggtttgttttgatgcaacaaagaactatttaagtcgatatgtacgtcttc |
34069128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 40192108 - 40192019
Alignment:
| Q |
42 |
agtccttgaatttaaaaatatcaaccgatttagtcattttctcaaattttgtatca-gaattttaaagattctatgcttgttttgatgca |
130 |
Q |
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||||||| |||| ||||||||||| | ||||| ||||||||||||| || | | || |||||||||| ||||||| | ||||||||||| |
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| T |
40192108 |
agtccttaaattgaaaaatatcaatcaatttaatcattttctcaaacttcgcaccataaattttaaaggttctatgttggttttgatgca |
40192019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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