View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21182_high_3 (Length: 360)
Name: NF21182_high_3
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33301957 - 33301627
Alignment:
| Q |
1 |
acaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactct |
100 |
Q |
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| T |
33301957 |
acaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactct |
33301858 |
T |
|
| Q |
101 |
attgcacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatcttgtgattgattttacactttactagtagtaaaatgtgaagaggg |
200 |
Q |
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| T |
33301857 |
attgcacaaatgatgttggggtcccaccaaaggtacatgaacatttttttctatcttgtgattgattttacactttactagtagtaaaatgtgaagaggg |
33301758 |
T |
|
| Q |
201 |
taattttctttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33301757 |
taattttctttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaaca |
33301658 |
T |
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| Q |
301 |
agtttgaatactgaagctgattccatctatg |
331 |
Q |
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| T |
33301657 |
agtttgaatactgaagctgattccatctatg |
33301627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 328
Target Start/End: Complemental strand, 33250349 - 33250013
Alignment:
| Q |
5 |
ggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattg |
104 |
Q |
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| T |
33250349 |
ggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgcaaacttgttgacagtgctaggctctattg |
33250250 |
T |
|
| Q |
105 |
cacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatc-----ttgtgattgattttacact---ttactagtagta---------a |
187 |
Q |
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| T |
33250249 |
cacagatgctgttggtggtccaccaaaggtaaa--aacaggagcaactttcctcgattgtgattga-tttacactttattactagcagtattaaaattaa |
33250153 |
T |
|
| Q |
188 |
aatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagctt |
287 |
Q |
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| T |
33250152 |
aatgtcaagaagataattttc-ttttcacacaaaacagcttattggatggaaggatggtgatcacaatctactagaggatcctgtaggtatcaaaagctt |
33250054 |
T |
|
| Q |
288 |
gaacaatgtaacaagtttgaatactgaagctgattccatct |
328 |
Q |
| |
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| T |
33250053 |
gaaaaatgtagcaggtttcaataatgaagctgattccatct |
33250013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 328
Target Start/End: Complemental strand, 33270521 - 33270185
Alignment:
| Q |
5 |
ggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattg |
104 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||| | ||| || |||||||| |
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| T |
33270521 |
ggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgcaaacttgttgacagtgctaggctctattg |
33270422 |
T |
|
| Q |
105 |
cacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatc-----ttgtgattgattttacact---ttactagtagta---------a |
187 |
Q |
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|||| ||| |||||| | |||||||||||| | |||| || || |||||||||| |||||||| ||||||| |||| | |
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| T |
33270421 |
cacagatgctgttggtggtccaccaaaggtaaa--aacaggagcaactttcctcgattgtgattga-tttacactttattactagcagtattaaaattaa |
33270325 |
T |
|
| Q |
188 |
aatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagctt |
287 |
Q |
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| T |
33270324 |
aatgtcaagaagataattttc-ttttcacacaaaacagcttattggatggaaggatggtgatcacaatctactagaggatcctgtaggtatcaaaagctt |
33270226 |
T |
|
| Q |
288 |
gaacaatgtaacaagtttgaatactgaagctgattccatct |
328 |
Q |
| |
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||| |||||| || |||| |||| ||||||||||||||||| |
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| T |
33270225 |
gaaaaatgtagcaggtttcaataatgaagctgattccatct |
33270185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 33310254 - 33310126
Alignment:
| Q |
7 |
agggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgca |
106 |
Q |
| |
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|||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| |||||||||| | ||| || || |||| || |
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| T |
33310254 |
agggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgttgacagtgctaggctatattaca |
33310155 |
T |
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| Q |
107 |
caaatgatgttggggtcccaccaaaggta |
135 |
Q |
| |
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||| ||||||| | | |||||||||||| |
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| T |
33310154 |
caagtgatgttcgtggtccaccaaaggta |
33310126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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