View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21182_high_5 (Length: 358)

Name: NF21182_high_5
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21182_high_5
NF21182_high_5
[»] chr7 (12 HSPs)
chr7 (25-350)||(36221014-36221339)
chr7 (84-350)||(36217021-36217295)
chr7 (76-237)||(35982400-35982561)
chr7 (76-237)||(36003812-36003973)
chr7 (90-243)||(36226293-36226446)
chr7 (114-325)||(35958415-35958634)
chr7 (111-325)||(35977867-35978089)
chr7 (111-325)||(35999279-35999501)
chr7 (111-243)||(35947207-35947339)
chr7 (268-326)||(35973898-35973956)
chr7 (268-326)||(35995310-35995368)
chr7 (275-325)||(35926323-35926373)
[»] chr1 (2 HSPs)
chr1 (275-321)||(18126298-18126344)
chr1 (90-219)||(18126105-18126234)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 25 - 350
Target Start/End: Complemental strand, 36221339 - 36221014
Alignment:
Q  25 catcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacctt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36221339 catcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgtcagctgccacctt 36221240  T
Q  125 attcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtg 224  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36221239 attcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttcattcgagtg 36221140  T
Q  225 ctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgc 324  Q
    ||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221139 ctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgc 36221040  T
Q  325 agagcatgttgttggttcttcatctc 350  Q
    ||||||||||||||||||||| ||||    
T  36221039 agagcatgttgttggttcttcttctc 36221014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 84 - 350
Target Start/End: Complemental strand, 36217295 - 36217021
Alignment:
Q  84 attctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtg 183  Q
    |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | |    
T  36217295 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcg 36217196  T
Q  184 gatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc--------- 274  Q
    |||| ||||||||||| ||||||||||||||||  || ||||| ||||||||||  ||||||||       | ||||||||||||||||||             
T  36217195 gattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcc-tgtcttgcaactcaaatccatccaata 36217097  T
Q  275 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcatctc 350  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  |||||||| ||||    
T  36217096 catcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggttcttcttctc 36217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 35982400 - 35982561
Alignment:
Q  76 caacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaa 175  Q
    ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| ||    
T  35982400 caacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaa 35982499  T
Q  176 agctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 237  Q
    |||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  35982500 agcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 35982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 36003812 - 36003973
Alignment:
Q  76 caacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaa 175  Q
    ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| ||    
T  36003812 caacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaa 36003911  T
Q  176 agctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 237  Q
    |||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  36003912 agcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 36003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 36226293 - 36226446
Alignment:
Q  90 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 189  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||  |  || |||| |||||||||||||  ||||| | |    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactag 36226392  T
Q  190 aggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa 243  Q
    |||||||||| || |||| ||||||||| | ||||||||  ||||||| |||||    
T  36226393 aggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa 36226446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 325
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
Q  114 gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct 213  Q
    ||||||||||||| ||||||||  ||||||||||||||||  || | |||  |||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  35958415 gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct 35958514  T
Q  214 tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta 304  Q
    |||  || ||||| |||||||||| ||||| |||       |||||||||||| |||||||         ||||||||||||||||||| || ||||| |    
T  35958515 tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa 35958613  T
Q  305 cctgcctcaaccattcacgca 325  Q
     |||||||| |||||||||||    
T  35958614 tctgcctcagccattcacgca 35958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 325
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
Q  111 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 210  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35977867 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35977966  T
Q  211 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 301  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35977967 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35978065  T
Q  302 gtacctgcctcaaccattcacgca 325  Q
    | | |||||||| |||||||||||    
T  35978066 gaatctgcctcagccattcacgca 35978089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 325
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
Q  111 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 210  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35999279 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35999378  T
Q  211 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 301  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35999379 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35999477  T
Q  302 gtacctgcctcaaccattcacgca 325  Q
    | | |||||||| |||||||||||    
T  35999478 gaatctgcctcagccattcacgca 35999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
Q  111 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 210  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||| ||| |  ||||||| ||||||||||| ||||||  ||    
T  35947207 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta 35947306  T
Q  211 ccttcattcgagtgctgccagaagctttcacaa 243  Q
     |||||  || ||||| | ||||||||||||||    
T  35947307 acttcacccgtgtgcttcgagaagctttcacaa 35947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 35973898 - 35973956
Alignment:
Q  268 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 326  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35973898 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35973956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 35995310 - 35995368
Alignment:
Q  268 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 326  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35995310 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35995368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
Q  275 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca 325  Q
    ||||||||||||||||||| || ||||| | |||||||| |||||||||||    
T  35926323 catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca 35926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
Q  275 catcttcagcatcatagcagatgttttgtacctgcctcaaccattca 321  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  18126298 catcttcagcatcatagcagatattttgtatctgcctccgccattca 18126344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
Q  90 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 189  Q
    |||||||||||| | ||||| || | ||| ||||||| ||||||||  ||||| ||||| ||||  | || |||||||| ||| |||||  ||| ||| |    
T  18126105 gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg 18126204  T
Q  190 aggaagaaaacaagtggcataccttcattc 219  Q
    ||||| | || ||||||| |||||||||||    
T  18126205 aggaacagaagaagtggcgtaccttcattc 18126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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