View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21182_high_6 (Length: 355)
Name: NF21182_high_6
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 27243909 - 27244046
Alignment:
| Q |
39 |
ttaaggatgtagagacaaatgatatttgatcgatcaatcgatcccatcaaattgttttcttgatgatggttgaaaaatcaatctaaagacttccactgat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
27243909 |
ttaaggatgtagagacaaatgatatttgatcgatcaatcgatcccatcaaattgttttcttgatgatggttgaaaaatcagtctaaggacttccactgat |
27244008 |
T |
|
| Q |
139 |
ttgaatcattggttaattcatctgcttagtgtttatga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27244009 |
ttgaatcattggttaattcatctgcttagtgtttatga |
27244046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 27244144 - 27244209
Alignment:
| Q |
272 |
cgaaaatgttgtatttaacgaaaataatttcgtgaaagatagcaaacaaatgtattgttactatag |
337 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27244144 |
cgaaaatgttgtatataacgaaaataatttcgtgaaagatagcgaacaaatgtattgttactatag |
27244209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University