View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21182_high_8 (Length: 347)
Name: NF21182_high_8
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 32684329 - 32684634
Alignment:
| Q |
13 |
aaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32684329 |
aaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattttgatagtcaaagtgtcatttacata |
32684428 |
T |
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| Q |
113 |
acatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatc |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684429 |
acatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatc |
32684528 |
T |
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| Q |
213 |
tcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684529 |
tcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatata |
32684628 |
T |
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| Q |
313 |
agatgc |
318 |
Q |
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|||||| |
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| T |
32684629 |
agatgc |
32684634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 32560082 - 32559789
Alignment:
| Q |
25 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgta |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgta |
32559983 |
T |
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| Q |
125 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559982 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaataagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
32559883 |
T |
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| Q |
225 |
gttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgc |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559882 |
gttagagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgc |
32559789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 32692227 - 32692276
Alignment:
| Q |
13 |
aaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
62 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32692227 |
aaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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