View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21182_high_9 (Length: 347)
Name: NF21182_high_9
Description: NF21182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21182_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 1242400 - 1242094
Alignment:
| Q |
11 |
cacagaacaatcgtttcaacagaacttttaaagatgttataaaattcagaatagtttcctaacatataatccagcaatagtacttaatttgctgaccagg |
110 |
Q |
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| T |
1242400 |
cacagaacaatcgtttcaacagaacttttaaagatgttataaaattcagaatagtttcctaacatataatccagcaatagtacttaatttgttgaccagg |
1242301 |
T |
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| Q |
111 |
aacattgttacatattttcaatgcnnnnnnnngagtaacatctatcatgaattgataaattgcagcaatagtactttaatggaactcatcactaatctct |
210 |
Q |
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| T |
1242300 |
aacattgttacatattttcaatgcttttttt-gagtaacatctatcatgaattgataaattgcagcaatagtactttaatggaactcatcactaatctct |
1242202 |
T |
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| Q |
211 |
ctaattaatcaaatgtaattgaagatagataaacaaataatactattcatagttctatcaattgataatactactcatcactctctacttcttttatact |
310 |
Q |
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| T |
1242201 |
ctaattaatcaaatgtaattgaagatagataaacaaataatactattcatagttctatcaattgataatactactcatcactctctacttcttttatact |
1242102 |
T |
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| Q |
311 |
aatatcta |
318 |
Q |
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|||||||| |
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| T |
1242101 |
aatatcta |
1242094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 306
Target Start/End: Complemental strand, 1232745 - 1232619
Alignment:
| Q |
185 |
tttaatggaactcatcactaatctctctaattaatcaaatgtaattgaagatagataaacaaataatactattcatagttctatca----att-gataat |
279 |
Q |
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| T |
1232745 |
tttaatggaactcaccactaatctctttgtttaaaaaagcgtaattgaagatagatcaatggataatactattcataattctatcagtagattagataat |
1232646 |
T |
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| Q |
280 |
actactcatcactctctacttctttta |
306 |
Q |
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|| ||| |||||||||||||||||||| |
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| T |
1232645 |
accacttatcactctctacttctttta |
1232619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 1430327 - 1430378
Alignment:
| Q |
29 |
acagaacttttaaagatgttataaaattcagaatagtttcctaacatataat |
80 |
Q |
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|||| ||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
1430327 |
acagcacttttaaagatgttataagaatcagaatagtttcctaacatataat |
1430378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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