View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21183_high_1 (Length: 765)
Name: NF21183_high_1
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 11 - 669
Target Start/End: Original strand, 40086978 - 40087636
Alignment:
| Q |
11 |
aatacatatgtaataatttaaagaaatagaagcaattgagtgtaattaaatgtggcaggtcgaatagctctgctcaactagtttggactaatagtcgaat |
110 |
Q |
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| T |
40086978 |
aatacatatgtaataatttaatgaaatagaagcaattgagtgtaattaaatgtggcagttcgaatagctctgctcaactagtttggactaatagtcgaat |
40087077 |
T |
|
| Q |
111 |
gaattaaagtacatgagtttgaatccttatgaagaagaaaatactaatgtaataattaatatatcgagtattagcatttgttaatnnnnnnnnctgtgtt |
210 |
Q |
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| T |
40087078 |
gaattaaagtacatgaatttgaatccttatgaagaagaaaatactaatgtaataattaatctatcgagtattaacatttgttaataaaaaaaactgtgtt |
40087177 |
T |
|
| Q |
211 |
agtatcatgcccgtgtcagatatacaccacatgtatgacactgctttaatttgaagtgtcgatgctacttaatgattacttgcaagaaaaatattttatg |
310 |
Q |
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| T |
40087178 |
agtatcgtgcccgtgtcagatatacaccacatgtatgacactgttttaatttgaagtgtcgatgctacttaatgattacttgcaagaaaaatattttatg |
40087277 |
T |
|
| Q |
311 |
tttattaaattcgtcaattactagttgtgttgatagtgattggtaagtctgatatatgatattatggttggtgagtgcaggaatgattgctcatgtgatg |
410 |
Q |
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| T |
40087278 |
tttattaaattcgtcaattactagttgtgttgatagtgattggtaagtctgatatatgatattatggttggtgagtgcaggaatgattgctcatgtgatg |
40087377 |
T |
|
| Q |
411 |
acatttgaggttggtgcagtgctggatgatgagcattggcaggctcctgtctattgttttagtgaggctgagcctgaaccaaagatacacaacagaagga |
510 |
Q |
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| T |
40087378 |
acatttgaggttggtgcagtgctggatgatgagcattggcaggctcctgtctattgttttagtgaggctgagcctgaaccaaagatacacaacagaagga |
40087477 |
T |
|
| Q |
511 |
gcagttctttattagatttagaagctgctgttgatggtggttttcgtgggacattaatgagtgagatgagctaaaccacccagcaatagcatacggttta |
610 |
Q |
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| T |
40087478 |
gcagttctttattagatttagaagctgctgttgatggtggttttcgtgggacattaatgagtgagatgagctaaaccacccagcaatagcgtacggttta |
40087577 |
T |
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| Q |
611 |
taattgtgaggttagcatatgtactatgtataataatctagctatatgtactttgtttt |
669 |
Q |
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| T |
40087578 |
taattgtgaggttatcatatgtactatgtataataatctagctatatgtactttgtttt |
40087636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 334 - 617
Target Start/End: Original strand, 40077979 - 40078262
Alignment:
| Q |
334 |
gttgtgttgatagtgattggtaagtctgatatatgatattatggttggtgagtgcaggaatgattgctcatgtgatgacatttgaggttggtgcagtgct |
433 |
Q |
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| T |
40077979 |
gttgtgttgctagtgattggcaaggctgatgtatatgatgattggtggtaagtgcaggaatgattactgatgtgatgacatttgaggttggagcagttct |
40078078 |
T |
|
| Q |
434 |
ggatgatgagcattggcaggctcctgtctattgttttagtgaggctgagcctgaaccaaagatacacaacagaaggagcagttctttattagatttagaa |
533 |
Q |
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| T |
40078079 |
ggatgatgctcattggcaggctcctgactattgttttaataaggctgagcctgaaccccaaatacacaacagaaggagcagtttctcattagatttagaa |
40078178 |
T |
|
| Q |
534 |
gctgctgttgatggtggttttcgtgggacattaatgagtgagatgagctaaaccacccagcaatagcatacggtttataattgt |
617 |
Q |
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| T |
40078179 |
actgctattgttggcgattttcgttggacactaatgagtgagatgagataggccacccaataatatcatatgatttataattgt |
40078262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 287 - 490
Target Start/End: Original strand, 40082052 - 40082256
Alignment:
| Q |
287 |
tacttgcaagaaaaatattttatgtttattaaa----ttcgtcaattactagttgtgttgatagtgattggtaagtctgatatatgatattatggttggt |
382 |
Q |
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| T |
40082052 |
tacttgctagaaaaatatgtaatgtttattaaagtaattaattaattactaattgtgttacaagtgattggcaaggctgatatat---atgatgattggt |
40082148 |
T |
|
| Q |
383 |
gagtgcaggaatgattgctcatgtgatgacatttgaggttggtgcagtgctggatgatgagcattggcaggctcctgtctattgttttagtgaggctgag |
482 |
Q |
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| T |
40082149 |
gattgcaggaatgattactcatgtaatgacatttgaggttggagcagttctggatgatgcccattggcaggctcctgtctactgttttagtaaggctgag |
40082248 |
T |
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| Q |
483 |
cctgaacc |
490 |
Q |
| |
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| T |
40082249 |
gctgaacc |
40082256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 709 - 751
Target Start/End: Original strand, 40087628 - 40087670
Alignment:
| Q |
709 |
ctttgtttttggtttgcattatccaaatatgcatgttttatgt |
751 |
Q |
| |
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| T |
40087628 |
ctttgtttttggtttgcattatccaaatatgcatgttttatgt |
40087670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 44973712 - 44973773
Alignment:
| Q |
398 |
tgctcatgtgatgacatttgaggttggtgcagtgctggatgatgagcattggcaggctcctg |
459 |
Q |
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| T |
44973712 |
tgctcatgtgatgacatttgaggttggagcagtgcttgaggatgcgcaatggcaggctcctg |
44973773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 44975368 - 44975428
Alignment:
| Q |
398 |
tgctcatgtgatgacatttgaggttggtgcagtgctggatgatgagcattggcaggctcct |
458 |
Q |
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| T |
44975368 |
tgctcatgtgatgacatttgaggttggagcagtgcttgaggatccgcattggcaggctcct |
44975428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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