View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21183_high_10 (Length: 328)
Name: NF21183_high_10
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 38877454 - 38877755
Alignment:
| Q |
18 |
acaaggaaggtttggtaggataattttctcttaagcaaggtgaattcggtgatgctacgaataacacagcggctgaaatcacttttgcgctgctgcagga |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877454 |
acaaggaaggtttggcaggataattttctcttaagcaaggtgaattcggtgatgctacgaataacacagcggctgaaatcacttttgcgctgctgcagga |
38877553 |
T |
|
| Q |
118 |
actgtcacatggtcaagctgagttgtttgcaacaattgtgtggagtttgtggaagagtcacaatataaggttattgcagaatgttacggagacaacccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877554 |
actgtcacatggtcaagctgagttgtttgcaacagttgtgtggagtatgtggaagagtcacaatataaggttattgcagaatgttacggagacaacccaa |
38877653 |
T |
|
| Q |
218 |
gctatattggagcgagctaggcagctgttgtctaattggagagttgcgaattgtaagacccgtagttttgaaaataagtaaatatagataatatagtata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38877654 |
gctatattggagcgagctaggcagctgttgtctaattggagagttgcgaattgtaagacccgtagttttgaaaataattaaatatagataatatagtata |
38877753 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
|
|| |
|
|
| T |
38877754 |
at |
38877755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 5777644 - 5777771
Alignment:
| Q |
45 |
ctcttaagcaaggtgaattcggtgatgctacgaa-taacacagcggctgaaatcacttttgcgctgctgcaggaactgtcacatggtcaagctgagttgt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
5777644 |
ctcttaagcaaggtgaattcggtgatgctacaaaataacacagcggctgaaatcacttttgcgttgctgcaagaactgtcacatgttcaaggtgagttgt |
5777743 |
T |
|
| Q |
144 |
ttgcaacaattgtgtggagtttgtggaa |
171 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
5777744 |
ttgcaatggttgtgtggagtttgtggaa |
5777771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 15662458 - 15662425
Alignment:
| Q |
143 |
tttgcaacaattgtgtggagtttgtggaagagtc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
15662458 |
tttgcaacaattgtgtggagtttgtggaaaagtc |
15662425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 30092697 - 30092485
Alignment:
| Q |
49 |
taagcaaggtgaattcggtgatgctacg-aataacacagcggctgaaatcacttttgcgctgctgcaggaactgtcacatggtcaagctgagttgtttgc |
147 |
Q |
| |
|
|||| |||||||||||||| |||||| || ||||||| ||||||||||| |||||| || | || || |||||||||| ||||||| |||||||||| |
|
|
| T |
30092697 |
taagtaaggtgaattcggtaatgctaaataacaacacagtggctgaaatcatttttgcattgttacaagatctgtcacatgctcaagctcagttgtttgc |
30092598 |
T |
|
| Q |
148 |
aacaattgtgtggagtttgtggaagagtcacaatataaggttattgcagaatgttacggagacaacccaagctatattggagcgagctaggcagctgttg |
247 |
Q |
| |
|
||| | | ||||||||||||| | | |||| || |||||| ||||||||||||||| ||| |||| || |||||||||| || ||||||||||| |
|
|
| T |
30092597 |
aacggtactttggagtttgtggacaaaccgcaatttacggttatggcagaatgttacggaaacagcccaggccatattggagcacgcgaggcagctgtta |
30092498 |
T |
|
| Q |
248 |
tctaattggagag |
260 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
30092497 |
tttaaatggagag |
30092485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 25938329 - 25938481
Alignment:
| Q |
52 |
gcaaggtgaattcggtgatgctacgaa-taacacagcggctgaaatcacttttgcgctgctgcaggaactgtcacatggtcaagctgagttgtttgcaac |
150 |
Q |
| |
|
|||||||||||| ||| |||||| ||| ||||||| |||||||||||| |||||| ||||||| ||||||||| | |||| |||||||||||| ||| |
|
|
| T |
25938329 |
gcaaggtgaatttggtaatgctaggaaataacacaacggctgaaatcatctttgcgttgctgcaagaactgtcattcgttcaaactgagttgtttg-aac |
25938427 |
T |
|
| Q |
151 |
aattgtgtggagtttgtggaagagtcacaatataaggttattgcagaatgttac |
204 |
Q |
| |
|
|| | ||||||||||||||||| | ||| | ||||| | |||||||||||| |
|
|
| T |
25938428 |
ggttctttggagtttgtggaagagccgtaatttgaggttgtggcagaatgttac |
25938481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University