View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21183_low_12 (Length: 250)

Name: NF21183_low_12
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21183_low_12
NF21183_low_12
[»] chr1 (1 HSPs)
chr1 (15-233)||(42456397-42456614)
[»] chr5 (2 HSPs)
chr5 (143-225)||(10081097-10081179)
chr5 (145-221)||(2676533-2676609)
[»] chr3 (2 HSPs)
chr3 (143-221)||(19644427-19644504)
chr3 (142-225)||(54546856-54546939)
[»] chr8 (1 HSPs)
chr8 (176-227)||(2271188-2271239)
[»] chr4 (2 HSPs)
chr4 (143-221)||(17888648-17888726)
chr4 (143-221)||(31377342-31377420)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 42456397 - 42456614
Alignment:
Q  15 aatattcttatactaacatgatgacttttctttttctttcnnnnnnnnnnnntgatgacttttctttagtaaaataaattatgacttttcctttgatttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| || ||||||||||||||||||||||    
T  42456397 aatattcttatactaacatgatgacttttctttttctttcaaaaaaaaaaa-tgatgacttttctttagtaaaaaaatttatgacttttcctttgatttg 42456495  T
Q  115 gtaagctaagagacatcaaatgagttttagtggcggagctaggattattgtaaggttcgggaaaaaataattgcaaaacatttacaggggatttacataa 214  Q
    |||||||||||||| || ||||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  42456496 gtaagctaagagacgtcgaatgagtgttagtggcggagccaggattattgtaaggtccgggaaaaaaaaattgcaacacatttataggggatttacataa 42456595  T
Q  215 gaaattgtaagtagataat 233  Q
    ||||||| |||||||||||    
T  42456596 gaaattgcaagtagataat 42456614  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 10081097 - 10081179
Alignment:
Q  143 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaaaacatttacaggggatttacataagaaattgtaag 225  Q
    ||||||||||| ||||||||||||| |  |||| |||||| |||||||| ||||||| ||| | ||||||||||||||||||||    
T  10081097 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggag-tttacataagaaattgtaag 10081179  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 2676609 - 2676533
Alignment:
Q  145 tggcggagctaggattattgtaaggttcggg-aaaaaataattgcaaaacatttacaggggatttacataagaaattg 221  Q
    ||||||||| ||  ||||||||| | ||||| |||||| |||||||| ||||||| ||||| ||||||||||||||||    
T  2676609 tggcggagccagatttattgtaaagctcgggcaaaaaaaaattgcaacacatttatagggg-tttacataagaaattg 2676533  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 19644504 - 19644427
Alignment:
Q  143 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaaaacatttacaggggatttacataagaaattg 221  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||| || ||||||| | |||| |||||||||||||||    
T  19644504 agtggcggagtcaggattattgtaaagttcgggcaaaaaaaattgtaacacatttata-gggaattacataagaaattg 19644427  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 54546856 - 54546939
Alignment:
Q  142 tagtggcggagctaggattattgtaaggttcgggaaaaaataa-ttgcaaaacatttacaggggatttacataagaaattgtaag 225  Q
    |||||||||||| ||||||||| ||| ||  || |||||| || ||| || ||||||| |||| |||||||||||||||||||||    
T  54546856 tagtggcggagccaggattattataaagtctggtaaaaaaaaaattgtaacacatttataggg-atttacataagaaattgtaag 54546939  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 2271188 - 2271239
Alignment:
Q  176 aaaaaataattgcaaaacatttacaggggatttacataagaaattgtaagta 227  Q
    |||||| | |||||| ||||||| ||||| ||||||||||||||||||||||    
T  2271188 aaaaaaaatttgcaacacatttatagggggtttacataagaaattgtaagta 2271239  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 17888726 - 17888648
Alignment:
Q  143 agtggcggagctaggattattgtaaggttcgggaaaaaata-attgcaaaacatttacaggggatttacataagaaattg 221  Q
    ||||||||||| ||||||||||||| |   ||| ||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  17888726 agtggcggagccaggattattgtaaagccggggcaaaaatatattgcaacacatttatagggg-tttacataagaaattg 17888648  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 31377342 - 31377420
Alignment:
Q  143 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaaaacatttacaggggatttacataagaaattg 221  Q
    ||||||||||| ||||||||||||| |  |||| |||||| |||||||| ||||||| || || ||||||||||||||||    
T  31377342 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagcgg-tttacataagaaattg 31377420  T

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