View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21183_low_2 (Length: 640)
Name: NF21183_low_2
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 624
Target Start/End: Original strand, 21002715 - 21003323
Alignment:
| Q |
16 |
atgtcacataaacaagacaattagaactacggtacaaatatcattaaaaataagaaaatgatttgaaaccaactgcaacaaaatctcacccatatattta |
115 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21002715 |
atgtcacataaacaaaatgattagaactacggtacaaatatcattaaaaataagaaaatgatttgaaaccaactgcaacaaaatctcacccatatattta |
21002814 |
T |
|
| Q |
116 |
cgttgcttgcaatgctgcattattaagatagctggtgttttagtgtcatgaccttcaatatattgcaaaaacttatcggcatattcaccccacagcgaac |
215 |
Q |
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| T |
21002815 |
cgttgcttgcaatgctgaattattaagatagctggtgttttagtgtcatgaccttcatgatattgcaaaaacttatcgacatattcaccccacagcgaac |
21002914 |
T |
|
| Q |
216 |
aatgaactcgacgatttctgtatataaatatatatagcataacgaatcagctataatttatgcagaaagatttgcacataagtagagtgaaaaataactc |
315 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21002915 |
aatgaactcggcgatttatgtatataaatatatatagcataacgaatcaactataatgtatgcagaaagattagcacataagtagagtgaaaaataactc |
21003014 |
T |
|
| Q |
316 |
actttaaatcctctagggtaagatcaatgaccctgctcttcttgccatttttctctgtctctcttagcgtgtccttttccactatgtgtccaataacatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
21003015 |
actttaaatcctctagggtaagatcaatgaccctgctcttcttgccatttttctccgtctcccttagcgtgtccttttccactatgtgtccaataatatc |
21003114 |
T |
|
| Q |
416 |
tacaacaaacaaaccggtcaaagaattcactaccaaattgttttataaagatttaaggaccacgctaaaacacgacaaaattaccaattgttttgtcctc |
515 |
Q |
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| T |
21003115 |
tacaacaataaaaccggtcataaaattcaataccaaattgttttataaagatttaaggaccacactaaaacacgacaaaattaccaattgttttgtcctc |
21003214 |
T |
|
| Q |
516 |
aactgttgattgaaggattgaatcaaatgattcaaattcaaaactgttaagtggaacttttaaatcatcttggattcttttccacctagagtgttgcatc |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
21003215 |
aactgttgattgaaggattgaatcaaatgattcaaattcaaaattgttaagtggaacttttaaatcatcttggattcttgtccacctagagtgctgcatc |
21003314 |
T |
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| Q |
616 |
atggtaatt |
624 |
Q |
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||||||||| |
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| T |
21003315 |
atggtaatt |
21003323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 7575036 - 7575145
Alignment:
| Q |
310 |
taactcactttaaatcctctagggtaagatcaatgaccctgctcttcttgccatttttctctgtctctcttagcgtgtccttttccactatgtgtccaat |
409 |
Q |
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| T |
7575036 |
taactcactccagatcctcgagagtaagatcaatgaccccgctcttcctgcaatttttttctgtctccctcaacgcatccttttcaactatgtgaccaat |
7575135 |
T |
|
| Q |
410 |
aacatctaca |
419 |
Q |
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| T |
7575136 |
cacatctaca |
7575145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 424
Target Start/End: Original strand, 950778 - 950892
Alignment:
| Q |
310 |
taactcactttaaatcctctagggtaagatcaatgaccctgctcttcttgccatttttctctgtctctcttagcgtgtccttttccactatgtgtccaat |
409 |
Q |
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||||||||| | |||||| || |||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||| |||||||| ||||| |
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| T |
950778 |
taactcactcaagatcctcgagagtaagatcaatgaccctgctcttccagccatttttttctgtctccctcagcgcatccttttcaactatgtgaccaat |
950877 |
T |
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| Q |
410 |
aacatctacaacaaa |
424 |
Q |
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||||||||| |||| |
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| T |
950878 |
cacatctacaccaaa |
950892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 333 - 424
Target Start/End: Original strand, 14173361 - 14173452
Alignment:
| Q |
333 |
gtaagatcaatgaccctgctcttcttgccatttttctctgtctctcttagcgtgtccttttccactatgtgtccaataacatctacaacaaa |
424 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||| || || | |||||||| |||||||| ||||| ||||||||| |||| |
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| T |
14173361 |
gtaagatcaatgaccctgctcttcctgccatttttttctgtctccctcagtgcatccttttcaactatgtgaccaatcacatctacaccaaa |
14173452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 14173145 - 14173269
Alignment:
| Q |
109 |
atatttacgttgcttgcaatgctgcattattaagatagctggtgttttagtgtcatgaccttcaatatattgcaaaaacttatcggcatattcaccccac |
208 |
Q |
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|||||| ||||||||||| | |||||||| |||||||||| ||| ||||||| || || ||||| ||||| |||||||| | || | ||||||| |
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| T |
14173145 |
atattttcgttgcttgcagtactgcatta---agatagctggcgttgacatgtcatggccctccatatactgcaagaacttatcaacgtaattaccccac |
14173241 |
T |
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| Q |
209 |
agcgaacaatgaactcgacgatttctgt |
236 |
Q |
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| T |
14173242 |
aaagaacaatgaactcgacgatttctgt |
14173269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 950635 - 950712
Alignment:
| Q |
159 |
tgtcatgaccttcaatatattgcaaaaacttatcggcatattcaccccacagcgaacaatgaactcgacgatttctgt |
236 |
Q |
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||||||| || || ||||| ||||| |||||||| || || | |||||||| || |||||||||||||||||||||| |
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| T |
950635 |
tgtcatggccctccatatactgcaagaacttatcagcgtaattaccccacaaggagcaatgaactcgacgatttctgt |
950712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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