View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21183_low_5 (Length: 524)
Name: NF21183_low_5
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 34694369 - 34694070
Alignment:
| Q |
18 |
aacaaaggttttaatttcagagtcttataaaatggagtgtcaaaatgagttgtgacaaagcatataaaggcaaactaagagcaattgaaaagatacaaga |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34694369 |
aacaaaggttttaattttagagtcttataaaatggagtgtcaaaatgagttgtgacaaagcatataaaggcaaactaagataaattgaaaagatacaaga |
34694270 |
T |
|
| Q |
118 |
ggttggaagtgaacaatttattaccacattatcaaattgaatggtcaaaattataagttgctcaaaatttatgtaatggaggacctaaattgctcaatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
34694269 |
ggttggaagtgaacaatttattaccatattatcaaattgaatggtcaaaattataaattgttcaaaatttatgtaatggaagactgaaattgctcaatta |
34694170 |
T |
|
| Q |
218 |
aaaatagatgggtgggaaccaaaattacggttttttcaaaaattacgattttgaccttcaaaatatatactcaaactaaaaagtttatcgtaattaaaac |
317 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694169 |
aaaatagatggatggaaaccaaaattacggttttgtcaaaaattacgatttaggccttcaaaatatatactcaaactaaaaagtttatcgtaattaaaac |
34694070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 375 - 509
Target Start/End: Complemental strand, 34694012 - 34693884
Alignment:
| Q |
375 |
acaaaacccaattatactggttcaatatttaactaacatggatgagggagggaaggaggggccaagnnnnnnngggtgccactccctggatccgtcattg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34694012 |
acaaaacccaattatactggttcaatatttaactaacgtggatgagggaggga----ggggccaagccccc--gggtgccactccctggatccgtcatta |
34693919 |
T |
|
| Q |
475 |
ttaaataaaagttacgtcactttaaaagaaataaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34693918 |
ttaaataaaagttacgtcactttaaaagaaataaa |
34693884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 11090356 - 11090298
Alignment:
| Q |
132 |
aatttattaccacattatcaaattgaatggtcaaaattataagttgctcaaaatttatg |
190 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11090356 |
aatttattgccacatgatcaaattgaatgatcaaaattataagttgatcaaaatttatg |
11090298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 10565599 - 10565692
Alignment:
| Q |
94 |
aagagcaattgaaaagatacaagaggttggaagtgaacaatttattaccacattatcaaattgaatggtcaaaattataagttgctcaaaattt |
187 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||| || |||||||| || | ||| ||||||||| |
|
|
| T |
10565599 |
aagatcaattgaaatgatacaagaggttgagagtgaacaatttattgccacatcatcaaattagatagtcaaaatcatgaattgatcaaaattt |
10565692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 33333859 - 33333904
Alignment:
| Q |
94 |
aagagcaattgaaaagatacaagaggttggaagtgaacaatttatt |
139 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33333859 |
aagatcaattgaaatgatacaagaggttggaagtaaacaatttatt |
33333904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 18475707 - 18475666
Alignment:
| Q |
129 |
aacaatttattaccacattatcaaattgaatggtcaaaatta |
170 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
18475707 |
aacaatttattgccacatcatcaaattggatggtcaaaatta |
18475666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University