View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21183_low_6 (Length: 520)
Name: NF21183_low_6
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 48130015 - 48129747
Alignment:
| Q |
19 |
gttggtacatgtgtaagactactaatatgattaaaactgttgcagaaaactccttcgatcacagtcnnnnnnnnnnnnnnnnnnnnatttggaattgatg |
118 |
Q |
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| T |
48130015 |
gttggtacatgtgtaagactactaatatgattaaaactgttgcagaaaactccttcgatcacagtcttttttcgtttgttttttttatttggaattgatg |
48129916 |
T |
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| Q |
119 |
ttagctttattacaaaatttccttgccatgttctattgatcctaatttcactgcttttgctaagctttattcactgcaccttaccaataaattataatca |
218 |
Q |
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| T |
48129915 |
ttagctttattacaaaatttccttgccatgttctattgatcctaatttcactgcttttgctaagctttattcactgcaccttacca-------ataatca |
48129823 |
T |
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| Q |
219 |
ctagaccatgttacaaaagtatacagtcatagctaagcatagttgtgaaattgaagtccattgtacctcaatatct |
294 |
Q |
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| T |
48129822 |
ctagaccatgttacaaaagtatacagtcatagctaagcatagttgtgaaattgaagtccattgtacctcaatatct |
48129747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 367 - 503
Target Start/End: Complemental strand, 48129674 - 48129538
Alignment:
| Q |
367 |
gagtatttggtatccaatactactttatgttttgttttctttgcattattacatgatcaatgttactatattgttctaacactatttttctacaatttcc |
466 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48129674 |
gagtatttggtatccaatactactttatgtttttttttctttgcattattacatgatcaatgttactatattgttctaacactatttttctacaatttcc |
48129575 |
T |
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| Q |
467 |
aggaatgtcctttccttgaagatatcatctctgaatg |
503 |
Q |
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| T |
48129574 |
aggaatgtcctttccttgaagatatcatctctgaatg |
48129538 |
T |
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