View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21183_low_8 (Length: 404)
Name: NF21183_low_8
Description: NF21183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21183_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 6620088 - 6620467
Alignment:
| Q |
7 |
tgagttaactcacgcaaatatttctcagcaaaaatgagcgaaaacaaataagagaagagcaattctccaagtctagaagcccggtgaatataataggaga |
106 |
Q |
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| T |
6620088 |
tgagttaactcacgcaagtatttctcagtaaaaatgagcaaaaacagataggagaaaagcaattctccaagtcatgaagcctgatgaatataataggaga |
6620187 |
T |
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| Q |
107 |
caaaaaagagatgggagaggaaatagagatggaagaggcagtgggaggagatatattagagttgagcatcggctgaattcggtcataaaatttttcatct |
206 |
Q |
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| T |
6620188 |
caaaaaagagatgggagaggaaatagagatggaagaggtagtgggaggagatatattagagttgagcatcggctgaattcggtcataaaatttttcatct |
6620287 |
T |
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| Q |
207 |
agagtaaatgacaaatggtatttctaactcgtcttaaaggtgtaaatacgattttagttcttgcaattgtggtgtgttttagttttagtcttgttggcnn |
306 |
Q |
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| T |
6620288 |
agagtaaatgataaatggtatttctaactcatcttaaaggtgtaaatacgattttagttcttgcaattgtggtgtgttttagttttagtcttgttggctt |
6620387 |
T |
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| Q |
307 |
nnnnngtttggctttgatcattgcaaattcaaaaataaatttgtgtttggtcgctgtcatcggcttattagcccacatgacgtgat |
392 |
Q |
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| T |
6620388 |
tt----tttg--tttggtcgttgcaaattcaaaaacaaatttgtgtttggtcgttgtcatcgacttattagcccacatgacgtgat |
6620467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 30755727 - 30755793
Alignment:
| Q |
6 |
gtgagttaactcacgcaa--atatttctcagcaaaaatgagcgaaaacaaataagagaagagcaatt |
70 |
Q |
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| T |
30755727 |
gtgagttaactcatgcatgtatatttctcagcaggaatgagcaaaaacagataagagaagagcaatt |
30755793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 50899119 - 50899052
Alignment:
| Q |
5 |
cgtgagttaactcacgcaaat--atttctcagcaaaaatgagcgaaaacaaataagagaagagcaatt |
70 |
Q |
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|||||||||||||||||| | |||||||||| |||||||| |||||| || |||||||||||||| |
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| T |
50899119 |
cgtgagttaactcacgcatgtgtatttctcagcggaaatgagcaaaaacagatgagagaagagcaatt |
50899052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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