View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_high_1 (Length: 673)

Name: NF21184_high_1
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_high_1
NF21184_high_1
[»] chr7 (7 HSPs)
chr7 (23-659)||(31718902-31719538)
chr7 (23-488)||(31721669-31722143)
chr7 (23-427)||(31711027-31711437)
chr7 (67-482)||(31716139-31716548)
chr7 (344-413)||(31730169-31730238)
chr7 (282-417)||(31726049-31726184)
chr7 (141-253)||(31725929-31726041)
[»] chr5 (1 HSPs)
chr5 (554-625)||(6287206-6287279)
[»] chr4 (3 HSPs)
chr4 (575-613)||(6122147-6122185)
chr4 (560-612)||(8482365-8482417)
chr4 (550-614)||(34113651-34113715)
[»] chr1 (1 HSPs)
chr1 (560-614)||(7890409-7890463)
[»] chr8 (1 HSPs)
chr8 (561-613)||(41957545-41957597)


Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 23 - 659
Target Start/End: Complemental strand, 31719538 - 31718902
Alignment:
Q  23 agttcaaggtattcaaaacatggaaataaagaagtatttaaccagacggggataccggcgtctcgactatggcatgaccaccaccggccgacgaaagaag 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719538 agttcaaggtattcaaaacatggaaataaagaagtatttaagcagacggggataccggcgtctcgactatggcatgaccaccaccggccgacgaaagaag 31719439  T
Q  123 atgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31719438 atgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaa 31719339  T
Q  223 aagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagtttggtatgaaacggattccaaa 322  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  31719338 aagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaa 31719239  T
Q  323 ggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattct 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31719238 ggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatgaactatattct 31719139  T
Q  423 atgtaattgtttgtttctttgttttcttagaatttttgtaaaaaatttcacgtgattcccatttccttattaggatgtgttaattacttaattcaactgt 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31719138 atgtaattgtttgtttctttgttttcttagaatttttgtaaaaaaattcacgtgattcccatttccctattaggatgtgttaattacttaattcaactgt 31719039  T
Q  523 atcatatttttatatttttattgtccgatgtataagttagttttcaccactgaatcaataaattttaccattaaatcaaattaaatatgatgatttattg 622  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  31719038 atcatatttttatatttttattgttcgatgtataagttagttttcatcactgaatcaataaatcttaccattaaatcaaatgaaatatgatgatttattg 31718939  T
Q  623 attcaactgagaaaaatacatttttgtatgatgaaag 659  Q
    ||| |||||||||||||||||||||||||||||||||    
T  31718938 atttaactgagaaaaatacatttttgtatgatgaaag 31718902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 23 - 488
Target Start/End: Complemental strand, 31722143 - 31721669
Alignment:
Q  23 agttcaaggtattcaaaacatggaaataaagaagtatttaaccagacggggataccggcgtctcgactatggcatgaccaccaccggccgacgaaagaag 122  Q
    ||||||||  |||||||||||||||||||  | ||| |||| ||||||||| || |||||||||||||| ||||  || |||||||||||||| ||||||    
T  31722143 agttcaagcaattcaaaacatggaaataacaaggtacttaagcagacggggctatcggcgtctcgactacggcacaacaaccaccggccgacggaagaag 31722044  T
Q  123 atgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaa 222  Q
    |||||  | ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31722043 atgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaa 31721944  T
Q  223 aagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagtttggtatgaaacggattccaaa 322  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  31721943 aagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaa 31721844  T
Q  323 ggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaacta 416  Q
    ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31721843 ggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaacta 31721744  T
Q  417 tattctat---gtaattgtttgtttctttgttttcttagaatttttgtaaaaaatttcacgtgattcccatttcc 488  Q
    ||||| ||   ||||||| |||||||||||||||||| ||| |||||||| |  || |||||||||| |||||||    
T  31721743 tattccatgtagtaattgcttgtttctttgttttctttgaagttttgtaagagtttccacgtgattctcatttcc 31721669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 427
Target Start/End: Complemental strand, 31711437 - 31711027
Alignment:
Q  23 agttcaaggtattcaaaacatggaaataaagaagtatttaaccagacggggataccggcgtctcgactatggcatgaccaccaccggccgacgaaagaag 122  Q
    ||||||||  |||||||||||||||||||  | ||| |||| ||||||||| || |||||||||||||| ||||  || ||| |||||||||| ||||||    
T  31711437 agttcaagcaattcaaaacatggaaataacaaggtacttaagcagacggggctatcggcgtctcgactacggcacaacaaccgccggccgacggaagaag 31711338  T
Q  123 atgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaa 222  Q
    |||||  | ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31711337 atgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaa 31711238  T
Q  223 aagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagtttggtatgaaacggattccaaa 322  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  31711237 aagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacggattccaaa 31711138  T
Q  323 ggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaacta 416  Q
    ||||||||||||||      |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31711137 ggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatgaacta 31711038  T
Q  417 tattctatgta 427  Q
    ||||| |||||    
T  31711037 tattccatgta 31711027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 67 - 482
Target Start/End: Complemental strand, 31716548 - 31716139
Alignment:
Q  67 gacggggataccggcgtctcgactatggcatgaccaccaccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagat 166  Q
    ||||||| |||||||| |||||||| ||||  |||||| |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||    
T  31716548 gacggggctaccggcgcctcgactacggcacaaccacccccggccgacggaagaagatgcagatcatacggatgagaagtccacgtagggattggaagat 31716449  T
Q  167 cagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacatatatgaactttatgttgaagttagccggt 266  Q
    ||||||||| |||||||| ||||||||||||||||             | |||||||| |||||||||| ||||||||||||||| ||||||| || |||    
T  31716448 cagaacaagtccaaagctaagatggatgataagat-------------ggtgacaaaaatcaagaatacttatatgaactttatgctgaagttggctggt 31716362  T
Q  267 aacgtaggaggggcattgaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgagg 366  Q
    || |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  31716361 aatgtaggaggggcattgaacactgataacaagtttggtgtgaaaaggattccaaaggctcgtcaagtatctaaaggttattctggtgatgcattcgagg 31716262  T
Q  367 ctaggcttatatttgagatttctaagaccttggttgcttcacatga----actatattctatgtaattgtttgtttc-tttgttttcttagaa--ttttt 459  Q
    |||||||||| ||| |||||||||| || |||||||||||||||||    ||||||||  ||||||||||||||||| ||||||||||| |||  |||||    
T  31716261 ctaggcttattttttagatttctaaaactttggttgcttcacatgaacgtactatatttcatgtaattgtttgtttcatttgttttctttgaattttttt 31716162  T
Q  460 gtaaaaaatttcacgtgattccc 482  Q
    ||||||| |||||||||||||||    
T  31716161 gtaaaaactttcacgtgattccc 31716139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 31730169 - 31730238
Alignment:
Q  344 ttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaa 413  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  31730169 ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggccttggttgcttctcatgaa 31730238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 282 - 417
Target Start/End: Original strand, 31726049 - 31726184
Alignment:
Q  282 ttgaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttg 381  Q
    ||||||||||||||||  ||||||  ||||| |||||||||||||| |||||| ||||| | |||| |  |||||||||| |||| || ||| |||| ||    
T  31726049 ttgaacactgataacatctttggtgggaaacagattccaaaggctcctcaagtttctaaggattatgccagtgatgcgttggaggttaagctcatatatg 31726148  T
Q  382 agatttctaagaccttggttgcttcacatgaactat 417  Q
    ||||||| ||| | ||| | ||||| ||||||||||    
T  31726149 agatttcaaaggctttgatggcttctcatgaactat 31726184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
Q  141 agaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacatata 240  Q
    ||||| ||||||| |  ||||| ||||| ||||| ||||| ||| |||||| |||| | ||||||||||||| ||||||||||  | |||||    ||||    
T  31725929 agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata 31726028  T
Q  241 tgaactttatgtt 253  Q
    |||||||||||||    
T  31726029 tgaactttatgtt 31726041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 625
Target Start/End: Original strand, 6287206 - 6287279
Alignment:
Q  554 ataagttagttttcaccactgaatcaataaattttaccattaaatcaaattaaatatg--atgatttattgatt 625  Q
    ||||||||||||||| || | |||||||||||||| || |||||| |||| | |||||  ||||||||||||||    
T  6287206 ataagttagttttcatcattaaatcaataaattttgccgttaaattaaatgatatatgatatgatttattgatt 6287279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 613
Target Start/End: Original strand, 6122147 - 6122185
Alignment:
Q  575 aatcaataaattttaccattaaatcaaattaaatatgat 613  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  6122147 aatcaataaattttaccattaaattaaatgaaatatgat 6122185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 8482365 - 8482417
Alignment:
Q  560 tagttttcaccactgaatcaataaattttaccattaaatcaaattaaatatga 612  Q
    |||||||||||| ||  ||||||||||| |||||||||| |||| ||||||||    
T  8482365 tagttttcaccattggttcaataaatttcaccattaaattaaatgaaatatga 8482417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 614
Target Start/End: Original strand, 34113651 - 34113715
Alignment:
Q  550 atgtataagttagttttcaccactgaatcaataaattttaccattaaatcaaattaaatatgatg 614  Q
    ||||||||||||||||| | || ||||||||||||| | || ||||||| |||| | ||||||||    
T  34113651 atgtataagttagtttttatcattgaatcaataaatctcactattaaattaaatgatatatgatg 34113715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 614
Target Start/End: Original strand, 7890409 - 7890463
Alignment:
Q  560 tagttttcaccactgaatcaataaattttaccattaaatcaaattaaatatgatg 614  Q
    |||||||||| | || |||||||||||| |||||||||| |||| ||||||||||    
T  7890409 tagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgatg 7890463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 41957597 - 41957545
Alignment:
Q  561 agttttcaccactgaatcaataaattttaccattaaatcaaattaaatatgat 613  Q
    ||||| ||||| ||||||||||||||| || ||||||| |||| |||||||||    
T  41957597 agtttccaccattgaatcaataaatttcacgattaaattaaataaaatatgat 41957545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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