View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_16 (Length: 407)
Name: NF21184_high_16
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 392
Target Start/End: Complemental strand, 42454621 - 42454250
Alignment:
| Q |
23 |
aaacatgatattttcgtaaacaaggggatcaaaatataaggtctttcagcaaaatgaagtcttgatcaaaatacatagtacattgttttagaagttgttt |
122 |
Q |
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| T |
42454621 |
aaacaagatattttcgtaaacaaggggatcaaaatataaggtctttcagcaaaatgaagtcttgatcaaaatacatagtatattgttttagaagttgttt |
42454522 |
T |
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| Q |
123 |
acttggttaatagcactacagtgccttaaatccnnnnnnnn-gccttgccaaaatacaaggtctttcaccaaaattccatgttcgattcatctttgagcc |
221 |
Q |
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| T |
42454521 |
acttggttaatagcactacagtgccttaaatcctttttttttgccttgccaaaatacaaggtctttcaccaaaattccatgttcgattcatctttgagcc |
42454422 |
T |
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| Q |
222 |
annnnnnnnnnnnnnnn-caactgtgccatataattaatacgatatatgtacattggctctaactcaaccattacaaaaccggtttgtatggagagggct |
320 |
Q |
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| T |
42454421 |
atttttttctttctttttcaactgtgccatataattaatacgatatatgtacattggctctaactcaaccattacaaaaccggtttgtatggagagggct |
42454322 |
T |
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| Q |
321 |
acctcatcactgataaacacgttttcggactatatctcctctaatgtataactctcagcattgtgcaacaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42454321 |
acctcatcactgataaacacgttttcggactatatctcatctaatgtataactctcagcattgtgcaacaga |
42454250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 42454659 - 42454615
Alignment:
| Q |
2 |
atatttaaaataagggaatcaaaacatgatattttcgtaaacaag |
46 |
Q |
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| T |
42454659 |
atatttaaaataagggaatcaaaacatgatattttcgtaaacaag |
42454615 |
T |
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