View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_19 (Length: 393)
Name: NF21184_high_19
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 5603869 - 5604250
Alignment:
| Q |
1 |
gaaaagttgtaaaaccataataaatgtgtgtaatatcctataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctata |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
5603869 |
gaaaagttctaaaaccataataaatgtgtgtaatatcctataatagactcgttctttagaaattgtgaca--gaattaatttgtgaatgacggtgctata |
5603966 |
T |
|
| Q |
101 |
agtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttggtcgattca |
200 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603967 |
agtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttggtcgattca |
5604066 |
T |
|
| Q |
201 |
ttcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaagtggtgttcatgtggtgcaggagctcttcaagtgaatacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604067 |
ttcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaagtggtgttcatgtggtgcaggagctcttcaagtgaatacct |
5604166 |
T |
|
| Q |
301 |
gctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagtataat |
384 |
Q |
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| T |
5604167 |
gctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagtataat |
5604250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 5631501 - 5631120
Alignment:
| Q |
1 |
gaaaagttgtaaaaccataataaatgtgtgtaatatcctataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctata |
100 |
Q |
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| T |
5631501 |
gaaaagttctaaaaccataataaatgtgtgtaatatcctataatagactcgttctttagaaattgtgaca--gaattaatttgtgaatgacggtgctata |
5631404 |
T |
|
| Q |
101 |
agtataagcaaatacacaaacaacttactagtctgaaaattagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttggtcgattca |
200 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631403 |
agtaaaagcaaatacacaaacaacttattagtctgaaaattagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttggtcgattca |
5631304 |
T |
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| Q |
201 |
ttcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaagtggtgttcatgtggtgcaggagctcttcaagtgaatacct |
300 |
Q |
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| T |
5631303 |
ttcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaaccaagtggtgttcatgtggtgcaggagctcttcaagtgaatacct |
5631204 |
T |
|
| Q |
301 |
gctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagtataat |
384 |
Q |
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| T |
5631203 |
gctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagtataat |
5631120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 5649000 - 5648848
Alignment:
| Q |
39 |
tataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaacttactagtctgaaa |
138 |
Q |
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||||||||||||||||||||||||||||||| | | |||| ||||||||| | ||||||||||||| ||||||| ||||||||||||||||||| | ||| |
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| T |
5649000 |
tataatagactcgttctttagaaattgtgaccaagcattagtttgtgaatgatggtgctataagtaaaagcaaacacacaaacaacttactagtttaaaa |
5648901 |
T |
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| Q |
139 |
attagtttcctgtgatttcagaattcaaacatgctatattgagatcttatttg |
191 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
5648900 |
attagtttcatgtgatttcagaattcaaacatgctatattgaaatcatatttg |
5648848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 13168430 - 13168321
Alignment:
| Q |
275 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
374 |
Q |
| |
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|||| |||||||||||| ||| | ||||||||||||| ||||||| |||||||| ||| ||| || ||||||| |||||||||| ||||||||||||||| |
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| T |
13168430 |
tgcatgagctcttcaagcgaacatctgctcataaacagaattattatgcagtaacataaaattgagcagagcctgtaaactaaacttattccccaagtta |
13168331 |
T |
|
| Q |
375 |
tcagtataat |
384 |
Q |
| |
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|||||||||| |
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| T |
13168330 |
tcagtataat |
13168321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 5648718 - 5648613
Alignment:
| Q |
275 |
tgcaggagctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagtta |
374 |
Q |
| |
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|||| |||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| |||||||||||||| |||||| |||||| ||||||| ||| |
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| T |
5648718 |
tgcatgagctcttcaagagaatacctgttcataaacagaaatattttgcagtaacataaaatggaacagagcctctaaactgaatttagtccccaaatta |
5648619 |
T |
|
| Q |
375 |
tcagta |
380 |
Q |
| |
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|||||| |
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| T |
5648618 |
tcagta |
5648613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 6307144 - 6307247
Alignment:
| Q |
281 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
380 |
Q |
| |
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|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
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| T |
6307144 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
6307243 |
T |
|
| Q |
381 |
taat |
384 |
Q |
| |
|
|||| |
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|
| T |
6307244 |
taat |
6307247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 13168661 - 13168570
Alignment:
| Q |
36 |
tcctataatagactcgttctttagaaattgtgacaatgaattaatttgtgaatcacggtgctataagtataagcaaatacacaaacaactta |
127 |
Q |
| |
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|||||||||||||| |||||||||||||||||| | |||||||||||||||| | ||||||| ||||| ||||||| | |||||||||||| |
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|
| T |
13168661 |
tcctataatagacttgttctttagaaattgtgagcaagaattaatttgtgaatgatggtgctagaagtaaaagcaaacatacaaacaactta |
13168570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 5648802 - 5648736
Alignment:
| Q |
209 |
tttttctctcctcttcagttgttgct---ttcatcttctgtggaaccaaaccaagtggtgttcatgtggt |
275 |
Q |
| |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||||||||| |
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| T |
5648802 |
tttttctctcctcttcagctgttgctttcttcttcttctgtggaaccaaacaaa---gtgttcatgtggt |
5648736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 13168523 - 13168464
Alignment:
| Q |
196 |
attcattcaacagtttttctctcctcttcagttgttgctttcatcttctgtggaaccaaac |
256 |
Q |
| |
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|||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
13168523 |
attcattcgacattttttctctcctcttcag-aattgctttgttcttctgtggaaccaaac |
13168464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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