View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_high_2 (Length: 629)

Name: NF21184_high_2
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_high_2
NF21184_high_2
[»] chr3 (1 HSPs)
chr3 (1-629)||(50048434-50049063)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 50049063 - 50048434
Alignment:
Q  1 tggataaatcaacttatttccttgttgatgaccataagaagattgctatcaggtgcgtatatgccatactttccacatccacacagcnnnnnnnn--tga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  50049063 tggataaatcaacttatttccttgttgatgaccataagaagattgctatcaggtgcgtatatgccatactttccacatccacacagcaaaaaaaaaatga 50048964  T
Q  99 caacccaactaggtgccgcaaggtattgactgcggcttagaccctttaggatcgccgagactaatcattgactctgcaatggggcattcattttacacac 198  Q
    |||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50048963 caacccaactaggtgccgcaaggtattgactatagcttagaccctttgggatcgccgagactaatcattgactctgcaatggg-cattcattttacacac 50048865  T
Q  199 cggaaattttaatactatcggtggattagtttatagttgttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatc 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048864 cggaaattttaatactatctgtggattagtttatagttgttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatc 50048765  T
Q  299 cacaacaatagaaacaattttaaacaatatgaaaannnnnnnnnnnnatcttatataggaaaaaatgttgtattgtagtgtaacattttttcgttcaata 398  Q
    |||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  50048764 cacaacaatagaaacaatattaaacaatatgaaaaaatttattttttatcttatataggaaaaaatgttgtcttttagtgtaacattttttcgttcaata 50048665  T
Q  399 ttacttacccttcacttcataattttgtaccattttatcattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048664 ttacttacccttcacttcataattttgtaccattttatcattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagttt 50048565  T
Q  499 aatcaagtattcgttgttgttagtttgtatgtcttcagtttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctac 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048564 aatcaagtattcgttgttgttagtttgtatgtcttcagtttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctac 50048465  T
Q  599 ccccttttatcttgacaccaaatagttactt 629  Q
    |||||||||||||||||| ||||||||||||    
T  50048464 ccccttttatcttgacactaaatagttactt 50048434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University