View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_20 (Length: 389)
Name: NF21184_high_20
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 39150512 - 39150140
Alignment:
| Q |
9 |
attattctactacatattcacttacccttgcagattgaatttggcctatgtcaagagtcctaggctctctttcaatcgatgaagttctttgaatgggtgg |
108 |
Q |
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| T |
39150512 |
attattctactacatattcacttacccttgcagattgaatttggcctatgtcaagagtcctaggctctctttcaatcgatgaagttctttgaatgggtgg |
39150413 |
T |
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| Q |
109 |
taacctagccataggtgcctccattttattttttgtatgatgagttcttctctatataacgaaaataaatataaaaagtccctcacttcacttctatata |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39150412 |
taacctagccataggtgcctccattttatttttagtatgatgagttcttctctatataacgaaaataaatataaaaagtccctcacttcacttctatata |
39150313 |
T |
|
| Q |
209 |
taaatcaatcgcggagttgttgctgaattgaaggaattagaatgtgaattgaatcgtgtcctttaaatata--------tatagtttggaatatttggtg |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39150312 |
taaatcaatcgcggagttgttgctaaattgaaggaattagaatgtgaattgaatcgtgtcctttaaatatatatatatatatagtttggaatatttggtg |
39150213 |
T |
|
| Q |
301 |
aattgcctatgatatgacccttaggtgatggaccacgcaacacgcaacgtggtgaaccataaaaggtgggtta |
373 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39150212 |
aattgcctataatatgacccttaggtgatggaccacgcaacccgcaacgtggtgaaccataaaaggtgggtta |
39150140 |
T |
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