View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_21 (Length: 373)
Name: NF21184_high_21
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 48085153 - 48085443
Alignment:
| Q |
15 |
caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga |
114 |
Q |
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| T |
48085153 |
caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgctttttggga |
48085252 |
T |
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| Q |
115 |
tgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccaaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatg |
214 |
Q |
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| T |
48085253 |
tgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccgaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatg |
48085352 |
T |
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| Q |
215 |
gccttagattccaggacttgatcaatccatccaagacatttggttaatgnnnnnnngttagtttatgtgtgtattttctttatctgtgtcc |
305 |
Q |
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| T |
48085353 |
gccttagattccaggacttgatcaatccatccaagacatttggttaatgtttttttgttagtttatgtgtgtattttctttatctgtgtcc |
48085443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 48102491 - 48102536
Alignment:
| Q |
102 |
atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat |
147 |
Q |
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| T |
48102491 |
atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat |
48102536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 1809526 - 1809590
Alignment:
| Q |
77 |
aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaa |
141 |
Q |
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| T |
1809526 |
aacttgtgccctaacagagacttgtatgtattttgggatccattccatccatctgaaaaggcaaa |
1809590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 48085443 - 48085473
Alignment:
| Q |
325 |
cttttgttttgtattccatagctagtggttt |
355 |
Q |
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| T |
48085443 |
cttttgttttgtattccatagctagtggttt |
48085473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 7385635 - 7385568
Alignment:
| Q |
77 |
aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaa |
144 |
Q |
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| T |
7385635 |
aacttgtgctcaaatagagacttaaatgcattttgggatgcattccatccatctgaaaaggcaaacaa |
7385568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 35376405 - 35376267
Alignment:
| Q |
15 |
caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga |
114 |
Q |
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| T |
35376405 |
caaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagacctttatgcattttggga |
35376306 |
T |
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| Q |
115 |
tgcattccatccatctgaaaaggcaaacaaaatcatagt |
153 |
Q |
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| T |
35376305 |
tccattccatccatctgaaaaagctagcagaatcatagt |
35376267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 35357791 - 35357711
Alignment:
| Q |
74 |
tcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtc |
154 |
Q |
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| T |
35357791 |
tcaaaattgtgcccaaatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtc |
35357711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 35364581 - 35364521
Alignment:
| Q |
75 |
caaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaa |
135 |
Q |
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| T |
35364581 |
caaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaa |
35364521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 6339260 - 6339168
Alignment:
| Q |
22 |
agcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga |
114 |
Q |
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| T |
6339260 |
agcatgttgtggtcaaggaccattcaatggagttggactatgtactccagcttctaacttgtgccctaatagggatctttatgcattttggga |
6339168 |
T |
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