View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_22 (Length: 349)
Name: NF21184_high_22
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 22779550 - 22779667
Alignment:
| Q |
187 |
acttgatgcaataatacatttgaacaactttagttttccacttgtcataaaggtcatgatcaattaccttaactcataccatgaattatttatccacatt |
286 |
Q |
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| T |
22779550 |
acttgatgcaataatacatttgaacaactttagttttccacttgtcataaaggtcatgatcaattaccttaactcataccatgaattatttatccatatt |
22779649 |
T |
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| Q |
287 |
ttgacttaacctagaaag |
304 |
Q |
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| T |
22779650 |
ttgacttaacctagaaag |
22779667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 22779396 - 22779484
Alignment:
| Q |
17 |
atggataaacacatcaaaatgagatgaaaatgtgatcttaaaacatagcagataggggaacattattttagcttgagcatttctatcaa |
105 |
Q |
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| T |
22779396 |
atggataaacacatcaaaatgagatgaaaatgtgatcttaaaacatagcagataggggaacattattttagcttgagcatttctatcaa |
22779484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 22779514 - 22779554
Alignment:
| Q |
190 |
tgatgcaataatacatttgaacaactttagttttccacttg |
230 |
Q |
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| T |
22779514 |
tgatgcaataatacatttgaacaactttagttttccacttg |
22779554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 22779482 - 22779517
Alignment:
| Q |
211 |
caactttagttttccacttgtcataaaggtcatgat |
246 |
Q |
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| T |
22779482 |
caactttagttttccacttgtcataaaggtcatgat |
22779517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 37604109 - 37604238
Alignment:
| Q |
202 |
acatttgaacaactttagttttccacttgtcataaa-ggtcatgatcaattaccttaactcataccatgaattatttatccacattttgacttaacctag |
300 |
Q |
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| T |
37604109 |
acatttgaacaactttagtttagcacttgttataaaaggtcatgatcaactaccttaac----accatgaattatttatccacattttgacttaacctag |
37604204 |
T |
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| Q |
301 |
aaag---tccatcactactactaagctataataa |
331 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
37604205 |
aaagataaccatcactactactaagctataataa |
37604238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 37603926 - 37604037
Alignment:
| Q |
70 |
aggggaacattattttagcttgagcatttctatcaag-atctcttatttgttgttatttactttacataacatttnnnnnnncttgtggctactaatttc |
168 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||||| ||||||||||||||||| |
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| T |
37603926 |
aggggaacattattttagcttgagcatttcaatcaagaatctcttat---ttgttatttattctgcataacatttaaaaaaaattgtggctactaatttc |
37604022 |
T |
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| Q |
169 |
ttacttcaaatgttt |
183 |
Q |
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||||||||||||||| |
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| T |
37604023 |
ttacttcaaatgttt |
37604037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 46556884 - 46556755
Alignment:
| Q |
202 |
acatttgaacaactttagttttccacttgtcataaa-ggtcatgatcaattaccttaactcataccatgaattatttatccacattttgacttaacctag |
300 |
Q |
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||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
46556884 |
acatttgaacaactttagtttagcacttgttataaaaggtcatgatcaactaccttaac----accatgaattatttatccacattttgacttaacctgg |
46556789 |
T |
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| Q |
301 |
aaag---tccatcactactactaagctataataa |
331 |
Q |
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|||| |||||||||||||||||||||||||| |
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|
| T |
46556788 |
aaagataaccatcactactactaagctataataa |
46556755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 46557067 - 46556956
Alignment:
| Q |
70 |
aggggaacattattttagcttgagcatttctatcaag-atctcttatttgttgttatttactttacataacatttnnnnnnncttgtggctactaatttc |
168 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||||| ||||||||||||||||| |
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| T |
46557067 |
aggggaacattattttagcttgagcatttcaatcaagaatctcttat---ttgttatttattctgcataacatttaaaaaaaattgtggctactaatttc |
46556971 |
T |
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| Q |
169 |
ttacttcaaatgttt |
183 |
Q |
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||||||||||||||| |
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| T |
46556970 |
ttacttcaaatgttt |
46556956 |
T |
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