View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_high_27 (Length: 300)
Name: NF21184_high_27
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_27 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 41193622 - 41193907
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
41193622 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
41193721 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41193722 |
tcatgggcaggagcgaacaggatttgtttgttgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggatgtg |
41193821 |
T |
|
| Q |
207 |
catggaggagaagaaatcgctttgtcgactgccatgaattaggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattc |
292 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193822 |
catggaggagaagaaatcgctttgttgactgccatgaatttggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattc |
41193907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 1042550 - 1042841
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
1042550 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
1042649 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
|||||||||| ||||||| |||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042650 |
tcatgggcaggagcgaacaagatttggttgttacatctgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
1042749 |
T |
|
| Q |
207 |
catggaggagaagaaatcgc-tttgtcgactgccatgaat--taggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
295 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042750 |
catggaggagaagaaatcgcttttgttgactgccatgaattataggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
1042841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 41408727 - 41409011
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||| | ||||| |
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|
| T |
41408727 |
gaaatttggctcgaaatgacatagttagaagcagcagaagtagcaccggacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagtttttt |
41408826 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
| |||||||| | ||| |||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |
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| T |
41408827 |
-cgtgggcaggagtcgacatgatttggctgttgcatccgtggaagggaaggcaaatttgtcagatcccttacagactggtcatggtctgaattggaggtg |
41408925 |
T |
|
| Q |
207 |
catggaggagaagaaatcgctttgtcgactgccatgaattaggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattc |
292 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
41408926 |
tatggaggagaagcaattgctttgtttactgccataaattaggtgcaggagatgggactgtcaagtgagacgttcctaagtgattc |
41409011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 8887 - 8596
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
8887 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
8788 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
|||||||||| ||||||| |||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8787 |
tcatgggcaggagcgaacaagatttggttgttacatctgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
8688 |
T |
|
| Q |
207 |
catggaggagaagaaatcgc-tttgtcgactgccatgaat--taggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
295 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8687 |
catggaggagaagaaatcgcttttgttgactgccatgaattataggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
8596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 2241 - 1957
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| |
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|
| T |
2241 |
gaaatttggctcgaaatgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacaattccaatgcagtgtccgtgccagtttttt |
2142 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
| |||||||| | |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
2141 |
-cgtgggcaggagtcgacaggatttggctgttgcatccgtggaagggaaggcaaatttgttagatcccttacagactggtcatggtctgaattggaggtg |
2043 |
T |
|
| Q |
207 |
catggaggagaagaaatcgctttgtcgactgccatgaattaggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattc |
292 |
Q |
| |
|
|||||| ||||| ||| ||| ||| ||||| || ||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2042 |
tatggagaagaagcaattgctatgtttactgcaataaattaggtgcaggagatgggactgtcaagtaagacgttcctaagtgattc |
1957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 33324141 - 33324432
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
33324141 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
33324240 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
|||||||||| ||||||| |||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33324241 |
tcatgggcaggagcgaacaagatttggttgttacatctgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
33324340 |
T |
|
| Q |
207 |
catggaggagaagaaatcgc-tttgtcgactgccatgaat--taggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
295 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33324341 |
catggaggagaagaaatcgcttttgttgactgccatgaattataggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattcaca |
33324432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 22728 - 22444
Alignment:
| Q |
7 |
gaaacttggctcgaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagcgtcggggccagnnnnnn |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||| | ||||| |
|
|
| T |
22728 |
gaaatttggctcgaaatgacatagttagaagcagcagaagtagcaccggacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagtttttt |
22629 |
T |
|
| Q |
107 |
ncatgggcaggggcgaacaggatttgtttattgcatccgtggaagggaaggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtg |
206 |
Q |
| |
|
| |||||||| | ||| |||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
22628 |
-cgtgggcaggagtcgacatgatttggctgttgcatccgtggaagggaaggcaaatttgtcagatcccttacagactggtcatggtctgaattggaggtg |
22530 |
T |
|
| Q |
207 |
catggaggagaagaaatcgctttgtcgactgccatgaattaggtgcatgagatgggactgtcaagtgtgatgttcctaagtgattc |
292 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
22529 |
tatggaggagaagcaattgctttgtttactgccataaattaggtgcaggagatgggactgtcaagtgagacgttcctaagtgattc |
22444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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