View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_high_3 (Length: 544)
Name: NF21184_high_3
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_3 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 29 - 528
Target Start/End: Original strand, 25027663 - 25028163
Alignment:
| Q |
29 |
agtagctttgattgtactgtcttaaatgaaatatcggaatttgcagcaggtcaacctgtgctgaaatgggagaaacatgtt-aaaatagcagctgctgca |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25027663 |
agtagctttgattgtactgtcttaaatgaaatatcggaatttgcagcaggtcaacctgtgctgaaatgggagaaacatgtttaaaatagcagctgctgca |
25027762 |
T |
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| Q |
128 |
gctcgaggaatatgtagcagaagctatatgcatacatatttctcccctgaactataaatttattttcttatatttattctaagaactttgcaaattaact |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027763 |
gctcgaggaatatgtagcagaagctatatgcatacatatttctcccctgaactataaatttattttcttatatttattctaagaactttgcaaattaact |
25027862 |
T |
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| Q |
228 |
agaaaatcaacactgtgatttgactattactcgaagtattaatgtctaaaactgcaatgactaccgcaaacaagactcggcaaagaaaatcaaattcttg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027863 |
agaaaatcaacactgtgatttgactattactcgaagtattaatgtctaaaactgcaatgactaccgcaaacaagactcggcaaagaaaatcaaattcttg |
25027962 |
T |
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| Q |
328 |
tgatcaaaatatgcaacacgcttttacgctttaaaatcttaaggactgttactttagtagcacccagaacttttgaaagataaaaagattccaactatat |
427 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25027963 |
tgatcaaaatatgcaacacgcttttacgccttaaaatcttaaggactgttactctagtagtacccagaacttttgaaagataaaaagattccaactatat |
25028062 |
T |
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| Q |
428 |
aataaatcacagatacatttgacagatttatatctattatcggagttgatgttgagttgtgacattattgagttgtagtcattgatagcgaaccagaaaa |
527 |
Q |
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| T |
25028063 |
aataagtcacagatacatttgacagatttatatctattatcggagttgatgttgagttgtgacattattgagttgtagtcattgatagcgaaccagaaaa |
25028162 |
T |
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| Q |
528 |
c |
528 |
Q |
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| T |
25028163 |
c |
25028163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 25895039 - 25895111
Alignment:
| Q |
182 |
taaatttattttcttatatttattctaagaactttgcaaattaactagaaaatcaacactgtgatttgactat |
254 |
Q |
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| T |
25895039 |
taaattgatttgcttatatttcttctaagaaccttgcaaataaataaaaaaatcaacattatgatttgactat |
25895111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 20509866 - 20509830
Alignment:
| Q |
309 |
aaagaaaatcaaattcttgtgatcaaaatatgcaaca |
345 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |
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| T |
20509866 |
aaaggaaatcaaattcttgtgatcaaattatgcaaca |
20509830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 15515 - 15408
Alignment:
| Q |
35 |
tttgattgtactgtcttaaatgaaatatcggaatttgcagca---ggtcaacctgtgctgaaatgggagaaacatgttaaaatagcagctgctgcagctc |
131 |
Q |
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||||||||| ||| || |||||||||| ||||||||||| | ||||||||||| ||| ||||||| |||| ||||||||| ||||||| |||||||| |
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| T |
15515 |
tttgattgtgttgtgttgaatgaaatattggaatttgcagaaaatggtcaacctgtactggaatgggaaaaacgtgttaaaatcgcagctggtgcagctc |
15416 |
T |
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| Q |
132 |
gaggaata |
139 |
Q |
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| T |
15415 |
gaggaata |
15408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 17776131 - 17776051
Alignment:
| Q |
261 |
aagtattaatgtctaaaactgcaatgactaccgcaaacaagactcggcaaagaaaatcaaattcttgtgatcaaaatatgca |
342 |
Q |
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||||||| ||||||| ||||||| |||||||| || ||||| ||| | |||| ||||||||||||||||||||||||||||| |
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| T |
17776131 |
aagtattcatgtctagaactgca-tgactaccccacacaaggctctgtaaaggaaatcaaattcttgtgatcaaaatatgca |
17776051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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