View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_high_30 (Length: 260)
Name: NF21184_high_30
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 35496081 - 35495873
Alignment:
| Q |
18 |
taaattaattttttaaactcaaaatcagatgtaacaaacaaaagcatatttatttaatgagaaacctgcatgcagcttgatcacattctcttaattctta |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35496081 |
taaattaattttttaaattcaaaatcagatgtaacaaacaaaagaatatttatttaatgagaaacttgcatgcagcttgatcacatgctcttaattctta |
35495982 |
T |
|
| Q |
118 |
taataaagagctcttataggtgaacc--------tggctaacaccaattgacctccacaccaaaaagcaacacgtggcctccttttattgtgtgatttca |
209 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35495981 |
tagtaaagagctcttataggtgaaccatcataggtggctaacaccaattgacctccacaccaaaaagcaacacgtggcctctttttattgtgtgatttca |
35495882 |
T |
|
| Q |
210 |
taaaataag |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
35495881 |
taaaataag |
35495873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 23112772 - 23112698
Alignment:
| Q |
144 |
tggctaacaccaattgacctccacaccaaaaagcaacacgtggcctccttttattgtgtgatttcataaaataag |
218 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
23112772 |
tggcaaacacccgttgacctccacaccaaaaagcaacatgtgacctccttttattgtgtgatttcttaaaataag |
23112698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 11778233 - 11778201
Alignment:
| Q |
157 |
ttgacctccacaccaaaaagcaacacgtggcct |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
11778233 |
ttgacctccacaccaaaatgcaacacgtggcct |
11778201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University