View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_high_4 (Length: 522)
Name: NF21184_high_4
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Complemental strand, 16688105 - 16687639
Alignment:
| Q |
14 |
tgcgacgggagagaggatggtgtcagcttaactctaaagagtatggatcccaaaggaagagccacgactatgttgtagctttcatcagtggttttcttag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16688105 |
tgcgacgggagagaggatggtgtcagcttaactctaaagagtatggatcccaaaggaagagccacgactatgttgtagctttcatcagtggttttcttag |
16688006 |
T |
|
| Q |
114 |
cacaaggtgaatgagagagcgtagcaaaaaatggttatggaaacactgaaacggttacagtggttgaatcaaaggactccaatggaaacgatgaagtttt |
213 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16688005 |
cacaaggtgaacgagagagcgtagcaaaaaatggttatggaaacaccgaaacggttatggtggttgaatcaaaggactccgatggaaacgatgaagtttt |
16687906 |
T |
|
| Q |
214 |
ccctccttccagtgccaatgttttggagtagaccagggtagagatgcattgtcgaatatgatcatgctattgatcagagtcaagtgcgagggaggaaaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687905 |
ccctccttccagtgccaatgttttggagtagaccagggtagagatgcattgtcgaatatgatcatgctattgatcagagtcaagtgcgagggaggaaaga |
16687806 |
T |
|
| Q |
314 |
ttatggagcggatgagataattctctggcgagcggaaagagacttgcaaaacaagtcagcactctaacgctcaaatgagtgaagagaaatgaggaggaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16687805 |
ttatggagcggatgagataattctctggcgagcggaaagagacttgcaaaacaagttagcactctaacgctcaaatgagtgacgagaaatgaggaggaaa |
16687706 |
T |
|
| Q |
414 |
gcgtgcgaaaagttgtgaaattgtcatcgtagcttgagtgtgacattaagtcgcacttttatatcct |
480 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
16687705 |
gtgtgcgaaaagtggtgaaattgtcatcgtagcttgagtgtgacgttaagtcgcgcttctatatcct |
16687639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University