View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_high_41 (Length: 224)

Name: NF21184_high_41
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_high_41
NF21184_high_41
[»] chr4 (3 HSPs)
chr4 (1-224)||(50751000-50751205)
chr4 (5-36)||(10203729-10203760)
chr4 (4-85)||(1179031-1179112)
[»] chr3 (2 HSPs)
chr3 (1-224)||(4323312-4323517)
chr3 (4-36)||(9368581-9368613)
[»] chr8 (1 HSPs)
chr8 (111-159)||(20068248-20068296)
[»] scaffold0775 (1 HSPs)
scaffold0775 (4-36)||(6258-6290)
[»] scaffold0220 (1 HSPs)
scaffold0220 (38-86)||(23452-23500)
[»] chr7 (3 HSPs)
chr7 (4-36)||(18087618-18087650)
chr7 (4-36)||(12228501-12228533)
chr7 (4-36)||(18855934-18855966)
[»] chr6 (2 HSPs)
chr6 (7-36)||(139912-139941)
chr6 (7-36)||(147933-147962)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 50751000 - 50751205
Alignment:
Q  1 ctgaacccacttaatgactgccacgtcatcaaattacccctctacctctcagaccgattcaaaatgaccaatacacccctccttccatcttcttcaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  50751000 ctgaacccacttaatgactgccacgtcatcaaattacccctctacctctcagaccgattcaaaatgaccaatacacccctccttccatcttctt------ 50751093  T
Q  101 cctgaaaatcttcctagtcccaatctcaaacaacccacgtatcataccaacctcatccttatcatcatcaccaccactattaacaccaatccattgtgat 200  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751094 ------------cctagtcccaatctcaaacaacccacgtatcataccaacctcatccttatcatcatcaccaccactattaacaccaatccattgtgat 50751181  T
Q  201 tgagatgaacaaaatggcattcaa 224  Q
    ||||||||||||||||||||||||    
T  50751182 tgagatgaacaaaatggcattcaa 50751205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 10203729 - 10203760
Alignment:
Q  5 acccacttaatgactgccacgtcatcaaatta 36  Q
    ||||||||||||||||||||||||||||||||    
T  10203729 acccacttaatgactgccacgtcatcaaatta 10203760  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 1179112 - 1179031
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaattacccctctacctctcagaccgattcaaaatgaccaatacacccctccttc 85  Q
    |||| ||||||| |||||||| ||| || ||||||||||  | ||||||||| |||  ||| |||||||| |||||||||||    
T  1179112 aaccaacttaatcactgccacatcaccagattacccctcctcatctcagaccaatttgaaaagaccaatatacccctccttc 1179031  T

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Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4323517 - 4323312
Alignment:
Q  1 ctgaacccacttaatgactgccacgtcatcaaattacccctctacctctcagaccgattcaaaatgaccaatacacccctccttccatcttcttcaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4323517 ctgaacccacttaatgactgccacgtcatcaaattacccctctacctctcagaccgattcaaaatgaccaatacacccctccttccatcttcttc----- 4323423  T
Q  101 cctgaaaatcttcctagtcccaatctcaaacaacccacgtatcataccaacctcatccttatcatcatcaccaccactattaacaccaatccattgtgat 200  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323422 -------------ctagtcccaatctcaaacaacccacgtatcataccaacctcatccttatcatcatcaccaccactattaacaccaatccattgtgat 4323336  T
Q  201 tgagatgaacaaaatggcattcaa 224  Q
    ||||||||||||||||||||||||    
T  4323335 tgagatgaacaaaatggcattcaa 4323312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 9368613 - 9368581
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaatta 36  Q
    |||||||||||||| ||||||||||||||||||    
T  9368613 aacccacttaatgattgccacgtcatcaaatta 9368581  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 20068296 - 20068248
Alignment:
Q  111 ttcctagtcccaatctcaaacaacccacgtatcataccaacctcatcct 159  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  20068296 ttcccagtcccaatctcaaacaaaccacgaatcataccaacctcatcct 20068248  T

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Target: scaffold0775 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 6290 - 6258
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaatta 36  Q
    |||||||||||||||||||||||||||||||||    
T  6290 aacccacttaatgactgccacgtcatcaaatta 6258  T

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Target: scaffold0220 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 23452 - 23500
Alignment:
Q  38 ccctctacctctcagaccgattcaaaatgaccaatacacccctccttcc 86  Q
    ||||||| |||||||| |||||||||| |||||||| ||||||||||||    
T  23452 ccctctaactctcagatcgattcaaaaagaccaatatacccctccttcc 23500  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 18087650 - 18087618
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaatta 36  Q
    |||||||||||||||||||||||||||||||||    
T  18087650 aacccacttaatgactgccacgtcatcaaatta 18087618  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 12228501 - 12228533
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaatta 36  Q
    ||||||||||||||||| |||||||||||||||    
T  12228501 aacccacttaatgactgtcacgtcatcaaatta 12228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 18855966 - 18855934
Alignment:
Q  4 aacccacttaatgactgccacgtcatcaaatta 36  Q
    ||||||||||||||||| |||||||||||||||    
T  18855966 aacccacttaatgactgacacgtcatcaaatta 18855934  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 139912 - 139941
Alignment:
Q  7 ccacttaatgactgccacgtcatcaaatta 36  Q
    ||||||||||||||||||||||||||||||    
T  139912 ccacttaatgactgccacgtcatcaaatta 139941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 147933 - 147962
Alignment:
Q  7 ccacttaatgactgccacgtcatcaaatta 36  Q
    ||||||||||||||||||||||||||||||    
T  147933 ccacttaatgactgccacgtcatcaaatta 147962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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