View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_high_6 (Length: 483)
Name: NF21184_high_6
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 42 - 473
Target Start/End: Original strand, 15264521 - 15264952
Alignment:
| Q |
42 |
tttacactataaaacattatttctcaaccataccaatgagttatactcaacaaaccaatgcataaatatcacaagatcaattgcgatgcaatgaaccaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15264521 |
tttacactataaaacattatttctcaaccataccaatgagttatactcaacaaacctatgcataaatatcacaagatcaattgcgatgctatgaaccaca |
15264620 |
T |
|
| Q |
142 |
ttttataacaatatacgatttaagcataataaatacacctacaactgcaatttaaaactatggttatatattatgtcttttttcccttgtatatgattat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15264621 |
ttttataacaatatacgatttaagcataataaatacacctacaactgcaatttaaaactatgcttatatattatgtcttttttcccttgtatatgattat |
15264720 |
T |
|
| Q |
242 |
atacctttttctagtacacaattacacggttgaactaatagaagcatatgnnnnnnntgatgattaaactctggccaaacaacagaggtgcatttatagc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15264721 |
atacctttttctagtacacaattacacggttgaactaatagaagcatatgaaaaaaatgatgattaaactctggccaaacaacagaggtgcatttatagc |
15264820 |
T |
|
| Q |
342 |
aattggttcaagttgctactgagtaaaactactcatacacattgatacattatgtttaattctcaatgtcattcgcatttattagacagtgccaacacta |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15264821 |
aattggttcaagttgctactgagtaaaactactcatacacattgctacattatgtttaattctcaatgtcattcgcatttattagacagtgccaacacta |
15264920 |
T |
|
| Q |
442 |
tggacctgtttcttcctatctgaacccctttg |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15264921 |
tggacctgtttcttcctatctgaacccctttg |
15264952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University