View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_11 (Length: 462)
Name: NF21184_low_11
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Original strand, 44055806 - 44056240
Alignment:
| Q |
21 |
acgaggtagaaggttgttaataacagaagtacactaggaggaaataaggaatgagaagtatgagaaaggtattagtgttttaaaggacacattttttaga |
120 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44055806 |
acgaggtagaagattgttagtaacagaagtacagtaggaggaaataaggaatgagaagtataagaaaggtattagtgttttaaaggacacattttttaga |
44055905 |
T |
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| Q |
121 |
agacaaatcgaaagtaaaaagattgtacttgtttgctttatataaattgaatactgataaatggtaacataaaaatcttggaaagttggaataataaatt |
220 |
Q |
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||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44055906 |
agacaaatcaaaagtaaaaagattgttctagtttgctttatataaattgaatactgataaatggtaacataaacatcttggaaagttggaataataaatt |
44056005 |
T |
|
| Q |
221 |
atatcggaaagtggttttcattttgacggtggattttgagtggcattggtctgtgt---agcataaaatggttcgcaagagaagaggaagagttatgcat |
317 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44056006 |
atatgggaaagtggttttcattttgacggtgggttttgagtggcattggtctgtgtagcagcataaaatggttcgcaagagaagaggaagagttatgcat |
44056105 |
T |
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| Q |
318 |
agtgactagtgtatgtatggcctttatgaatagggaaaagagttgtaaatattttgtatagaggcaatattttaaaatatttttgctctttatttatgac |
417 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44056106 |
agtgactagtgtatgtatggcctttatgaataggg-aaagagttgtaaatattttgtatagaggcaatattttaaaatatttttgctgtttatttatgac |
44056204 |
T |
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| Q |
418 |
atcgttgaaattaagtggtgaataaattctaatatt |
453 |
Q |
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| T |
44056205 |
atcgttgaaattaagtggtgattaaattctaatatt |
44056240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 412
Target Start/End: Complemental strand, 36834500 - 36834109
Alignment:
| Q |
21 |
acgaggtagaaggttgttaataacagaagtacactaggaggaaataaggaatgagaagtatgagaaaggtattagtgttttaaaggacacattttttaga |
120 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36834500 |
acgaggtagaagattgttagtaacagaagtacagtaggaggaaataaggaatgagaagtataagaaaggtattagtgttttaaaggacacattttttaga |
36834401 |
T |
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| Q |
121 |
agacaaatcgaaagtaaaaagattgtacttgtttgctttatataaattgaatactgataaatggtaacataaaaatcttggaaagttggaataataaatt |
220 |
Q |
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||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36834400 |
agacaaatcaaaagtaaaaagatagttctagtttgctttatataaattgaatactgataa-------cataaaaatcttggaaagttggaataataaatt |
36834308 |
T |
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| Q |
221 |
atatcggaaagtggttttcattttgacggtggattttgagtggcattggtctgtgtagcataaaatggttcgcaagagaagaggaagagttatgcatagt |
320 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36834307 |
atatgggaaagtggttttcattttgacggtgggttttgagtggcattggtctgtgtagcataaaatggttcgcaagagaagaggaagagttatgcatagt |
36834208 |
T |
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| Q |
321 |
gactagtgtatgtatggcctttatgaatag-------ggaaaagagttgtaaatattttgtatagaggcaatattttaaaatatttttgctctttattt |
412 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36834207 |
gactagtgtatgtatggcctttatgaatagggaacagggaaaagagatgtaaatattttgtatagaggcaatattttaaaatatttttgctctttattt |
36834109 |
T |
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