View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_12 (Length: 449)
Name: NF21184_low_12
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Original strand, 893668 - 894095
Alignment:
| Q |
13 |
tcaacaacttgtgaaataagctatgcatataaactatttataattaatacagttccatattccaatttctagccgtagttgtttcagttaacacaaagca |
112 |
Q |
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| T |
893668 |
tcaacaacttgtgaaataagctatgcatataaactatttataattaatacagttccatattccaatttctagccgtagttgtttcagttaacacaaatca |
893767 |
T |
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| Q |
113 |
ttcaaggaagttcaagtttacaattatattacatataacaaaccactttgactcttttctcctaatgcatgaaatggtaaaagcaagacaaatagttctt |
212 |
Q |
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| T |
893768 |
ttcaaggaagttcaagtttacaatgatattacatataacaaaccactttgactcttttctcctaatgcatgaaatggtaaaagcaagacaaatagttctt |
893867 |
T |
|
| Q |
213 |
ccaaaataaaaactcaatagctaagtgcatgtcaagataggaaaggcataggaaaacgttaggatgcatatgccttaagtttctataggtgggatgcagg |
312 |
Q |
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| T |
893868 |
ccaaaataaaaactcaatagctaaatgcatgtcaagataggaaaggcaaaggaaaacttgaggatgcatatgccttaagtttctataggtggaatgcagg |
893967 |
T |
|
| Q |
313 |
gaattcaagttacaatgatcactaactataaaacttggattatcagaactttaccatcatccgagcaaatctgaatccgaaaagaataagaaactagtat |
412 |
Q |
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| T |
893968 |
gaattcaagttacaatgatcactaactataaaacttggattatcagaactttaccatcatccgagcaaatctgaatccgaaaagaataagaaactagtat |
894067 |
T |
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| Q |
413 |
cttgaaaggtccatgctccatattcctt |
440 |
Q |
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| T |
894068 |
cttgaaaggtccatgctccatattcctt |
894095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 405
Target Start/End: Complemental strand, 901342 - 901153
Alignment:
| Q |
207 |
gttcttccaaaataaaaactcaatagctaagtgcatgtcaagataggaaaggcataggaaaacgttaggatgcatatgccttaagtttctataggtggga |
306 |
Q |
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| T |
901342 |
gttcttcccaattgaaaattcaatagctaaatgcatgtcaagaaaggaaaggcaaagt------tgacgatgaatgtgccttaagtttctatacatggaa |
901249 |
T |
|
| Q |
307 |
tgcagggaattcaagttacaatgatcactaactataaaacttggattatcagaactttaccatcatccgagcaaatctgaatccgaaaagaataagaaa |
405 |
Q |
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| T |
901248 |
tgcagggaatccatgt---aatgatcactaactataaacctcagattatcagaactataccatcatcctagcaaatttgtatccaaaaaaaataagaaa |
901153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 901526 - 901430
Alignment:
| Q |
57 |
taatacagttccatattccaatttctagccgtagttgtttcagt-taacacaaagcattcaaggaagttcaagtttacaattatattacatataaca |
152 |
Q |
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| T |
901526 |
taataaagttccatattccaatttctaggtgtagttgtttcagtgcatcacaaagcatgccaggaggaccaagtttgcagtgatattacatataaca |
901430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 51190242 - 51190372
Alignment:
| Q |
208 |
ttcttccaaaataaaaactcaatagctaagtgcatgtcaagataggaaaggcataggaaaacgttaggatgcatatgccttaagtttctataggtgggat |
307 |
Q |
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||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||| | |||||| | || ||||||||||||||||||| || |
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| T |
51190242 |
ttcttcccaaataaaaagtcaatagctaaatgcatgtcaagataggaaaggc------aaacttgaggatgtttgtgacttaagtttctataggtggaat |
51190335 |
T |
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| Q |
308 |
gcagggaattcaagttacaatgatcactaactataaa |
344 |
Q |
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||| ||||| | || |||||||| ||| ||||||||| |
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| T |
51190336 |
gcaaggaatcctagctacaatgagcacaaactataaa |
51190372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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