View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_14 (Length: 422)
Name: NF21184_low_14
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 100 - 408
Target Start/End: Original strand, 38089050 - 38089358
Alignment:
| Q |
100 |
ttaaaattgctctcgtaacaatcataagcctaaatttattatcttattattggaatgactaggtaagcagacctttatgttaaactttgaattatactt- |
198 |
Q |
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| T |
38089050 |
ttaaaattgctctcgtaacaatcataagcctaaaattattatcttattattggaatgactaggtaagcagacctttatgttaaactttgaattatacttc |
38089149 |
T |
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| Q |
199 |
aacagatgcgcctcttgaaaggaaaataaaataaaataatctaatggaaccccgttgatcgaatctaatggaatcctttgatcaaaggttgggcaaagac |
298 |
Q |
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| T |
38089150 |
aacagatgcgcctcttgaa-ggaaaataaaataaaataatctaatggaatcccgttgatcgaatctaatggaatcctttgatcgaaggttgggcaaagac |
38089248 |
T |
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| Q |
299 |
ttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcggaagttgaaagcatgc |
398 |
Q |
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| T |
38089249 |
ttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccaatttttctccatccttcatgccatccatgttggaagttgaaagcatgc |
38089348 |
T |
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| Q |
399 |
ttgaaggaag |
408 |
Q |
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|||||||||| |
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| T |
38089349 |
ttgaaggaag |
38089358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 38088915 - 38089004
Alignment:
| Q |
11 |
cataggttcataaagtagtaggggctaatttggcttcctaaaactattttttgtttcttttcaaatatcccttgtttgagaatcctatat |
100 |
Q |
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| T |
38088915 |
cataggttcataaagtagtaggggctaatttggcttcctaaaactattttttgtttcttttcaaatatcccttgtttgagaatcctatat |
38089004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 38091553 - 38091635
Alignment:
| Q |
260 |
aatctaatggaatcctttgatcaaaggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatat |
344 |
Q |
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| T |
38091553 |
aatctaatggaaccctttgaacggaggt-gggtgaagacttgaagaaagag-aagtaattgtgatgatcaatgtggctcttatat |
38091635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 408
Target Start/End: Complemental strand, 38092014 - 38091882
Alignment:
| Q |
276 |
ttgatcaaaggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatc |
375 |
Q |
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| T |
38092014 |
ttgatcgaaggtttggcgaagacttcaagaaagtggaagtaatggtgataattaatgtggctattttacgtaccaatttttctctatctctcacgccctc |
38091915 |
T |
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| Q |
376 |
catgtcggaagttgaaagcatgcttgaaggaag |
408 |
Q |
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| T |
38091914 |
cttgtctttagttgtaagcatgcttgaatgaag |
38091882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 284 - 408
Target Start/End: Complemental strand, 19874758 - 19874634
Alignment:
| Q |
284 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
383 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||| ||||||||| || |||||||||| ||| |||||||||||| |
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| T |
19874758 |
aggttgggcaaagacttcaagaaagaggaagtaattttgatgatcgatgttgctcttttatgcaccaattcttctccatccctcaggccatccatgtctt |
19874659 |
T |
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| Q |
384 |
aagttgaaagcatgcttgaaggaag |
408 |
Q |
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| T |
19874658 |
cagttgtaagcatgcttgaaggaag |
19874634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 21003724 - 21003847
Alignment:
| Q |
284 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
383 |
Q |
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||||||||| ||||||| ||||||||||| |||||| |||||||||| || |||||| |||| ||||||||||||||||| ||| ||| |||||||| |
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| T |
21003724 |
aggttgggcgaagacttcaagaaagaggaggtaatgatgatgatcaacgttgctcttttatgtaccagtttttctccatcgctcaggccctccatgtctt |
21003823 |
T |
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| Q |
384 |
aagttgaaagcatgcttgaaggaa |
407 |
Q |
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| T |
21003824 |
cagttgtaagcatgtttgaaggaa |
21003847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 21008065 - 21007942
Alignment:
| Q |
284 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
383 |
Q |
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||||||||| ||||||| ||||||||||| |||| | |||||||||| || |||||| ||||||||||||||||||| || ||| ||| |||||||| |
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| T |
21008065 |
aggttgggcgaagacttcaagaaagaggaggtaacgatgatgatcaacgttgctcttttatgcaccagtttttctccttcgctcaggccttccatgtctt |
21007966 |
T |
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| Q |
384 |
aagttgaaagcatgcttgaaggaa |
407 |
Q |
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||||| ||||||||||||||||| |
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| T |
21007965 |
cagttgtaagcatgcttgaaggaa |
21007942 |
T |
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