View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_low_17 (Length: 407)
Name: NF21184_low_17
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_17 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 217 - 407
Target Start/End: Original strand, 36733450 - 36733642
Alignment:
| Q |
217 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactacaacnnnnnnnnnggttacaataacatggt |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactacta--aaaaaaaaggttacaataacatggt |
36733547 |
T |
|
| Q |
313 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733548 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagt |
36733642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 36733284 - 36733429
Alignment:
| Q |
8 |
aacacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctnnnnnnnnttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36733284 |
aacacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctaaaaaaacttga |
36733383 |
T |
|
| Q |
108 |
gagcaacacataatcgtccttttccaaatcaaataacgaatatgat |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733384 |
gagcaacacataatcgtccttttccaaatcaaataacgaatatgat |
36733429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
169 |
taacgaatatgatcaaacacaaactacaatataa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University