View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_low_2 (Length: 629)

Name: NF21184_low_2
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_low_2
NF21184_low_2
[»] chr3 (1 HSPs)
chr3 (1-629)||(50048434-50049063)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 50049063 - 50048434
Alignment:
Q  1 tggataaatcaacttatttccttgttgatgaccataagaagattgctatcaggtgcgtatatgccatactttccacatccacacagcnnnnnnnn--tga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  50049063 tggataaatcaacttatttccttgttgatgaccataagaagattgctatcaggtgcgtatatgccatactttccacatccacacagcaaaaaaaaaatga 50048964  T
Q  99 caacccaactaggtgccgcaaggtattgactgcggcttagaccctttaggatcgccgagactaatcattgactctgcaatggggcattcattttacacac 198  Q
    |||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50048963 caacccaactaggtgccgcaaggtattgactatagcttagaccctttgggatcgccgagactaatcattgactctgcaatggg-cattcattttacacac 50048865  T
Q  199 cggaaattttaatactatcggtggattagtttatagttgttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatc 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048864 cggaaattttaatactatctgtggattagtttatagttgttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatc 50048765  T
Q  299 cacaacaatagaaacaattttaaacaatatgaaaannnnnnnnnnnnatcttatataggaaaaaatgttgtattgtagtgtaacattttttcgttcaata 398  Q
    |||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  50048764 cacaacaatagaaacaatattaaacaatatgaaaaaatttattttttatcttatataggaaaaaatgttgtcttttagtgtaacattttttcgttcaata 50048665  T
Q  399 ttacttacccttcacttcataattttgtaccattttatcattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048664 ttacttacccttcacttcataattttgtaccattttatcattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagttt 50048565  T
Q  499 aatcaagtattcgttgttgttagtttgtatgtcttcagtttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctac 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50048564 aatcaagtattcgttgttgttagtttgtatgtcttcagtttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctac 50048465  T
Q  599 ccccttttatcttgacaccaaatagttactt 629  Q
    |||||||||||||||||| ||||||||||||    
T  50048464 ccccttttatcttgacactaaatagttactt 50048434  T

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