View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_24 (Length: 351)
Name: NF21184_low_24
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 65 - 336
Target Start/End: Original strand, 44475283 - 44475554
Alignment:
| Q |
65 |
aggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaacaaaaaacaggatgcattcagtgcaa |
164 |
Q |
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| T |
44475283 |
aggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaacaaaaaacaggatgcattcagtgcaa |
44475382 |
T |
|
| Q |
165 |
agagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaatta |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475383 |
agagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaatta |
44475482 |
T |
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| Q |
265 |
tttaatctttataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475483 |
tttaatctttataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttg |
44475554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 44474879 - 44474920
Alignment:
| Q |
18 |
gtatatatcataattgctcatctggtgtgatccctttgatca |
59 |
Q |
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| T |
44474879 |
gtatatatcataattgctcatctggtgtgatccctttgatca |
44474920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 59 - 287
Target Start/End: Original strand, 38633360 - 38633586
Alignment:
| Q |
59 |
atcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataaga---acaaaaaacaggatgcat |
155 |
Q |
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| T |
38633360 |
atcgaaagggaatgtatgcaaggagttctaattgtggagaaaattagacagtattcagaagtaacacataataataagaagaacaaaaaacaggatgcat |
38633459 |
T |
|
| Q |
156 |
tcagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatca |
255 |
Q |
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| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| || |
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| T |
38633460 |
ttagtgcaaagaaactaaagaagagatcgtgtatatgggcctttttgaagaccatcaaagctagtatctgaatcttaatctgc-----aacttggcaaca |
38633554 |
T |
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| Q |
256 |
ggtaaattatttaatctttataaaaagtatta |
287 |
Q |
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| T |
38633555 |
ggtaaattacttgatctttaaaaaaagtatta |
38633586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 39849154 - 39849361
Alignment:
| Q |
126 |
ataaaaataagaacaaaaaacaggatgcattcagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctg |
225 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||| ||||| |||| || |||| |||| ||||| |||||||| ||||||||||||||||||||||||| || |
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| T |
39849154 |
ataataataacaacaaaaaacagggtgcatttagtgcgaagaaagcaaagaagagttcgtgcatatgggcaattttgaagaccatcaaagctattatatg |
39849253 |
T |
|
| Q |
226 |
aatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttataa-----aaagtattatagaaaatttgattttgtattcatggttaccac |
320 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| | |||||| |||||||||| |
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| T |
39849254 |
aatcttaatctgc-----aacttggcatcaggtaaattatttgatcttttaaaaaattaaagtattatggaaaatttgatatagtattcgtggttaccac |
39849348 |
T |
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| Q |
321 |
tatattatcaccttt |
335 |
Q |
| |
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||||||||||||| |
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| T |
39849349 |
--tattatcaccttt |
39849361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 38453445 - 38453341
Alignment:
| Q |
34 |
ctcatctggtgtgatccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaat |
133 |
Q |
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||||||||||||||| | || | ||||||| || ||||||| | ||||||| ||||||||||||||| ||| |||||| ||||||||||||| ||| |
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| T |
38453445 |
ctcatctggtgtgattctttctgttatcgaaatggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataat |
38453346 |
T |
|
| Q |
134 |
aagaa |
138 |
Q |
| |
|
||||| |
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| T |
38453345 |
aagaa |
38453341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 39849059 - 39849139
Alignment:
| Q |
49 |
ccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataa |
129 |
Q |
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||||||| | ||| |||||| ||||||| | |||||| |||||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
39849059 |
ccctttggttatcaaaagggaatatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataa |
39849139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 38453297 - 38453204
Alignment:
| Q |
244 |
aacttggcatcaggtaaattatttaatctttataa----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcaccttt |
335 |
Q |
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|||||||||||||||||||||||| || ||| || ||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
38453297 |
aacttggcatcaggtaaattatttgattttttgaacaaaaaactattatggaaaatttgatatagtattcatggttaccac--tattatcaccttt |
38453204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 7045640 - 7045435
Alignment:
| Q |
37 |
atctggtgtgatccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataag |
136 |
Q |
| |
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||||||||||||| ||||||| ||| |||| ||||||| | |||||||||||||||||||||||| | || ||||| |||||||| |||| |||| | |
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| T |
7045640 |
atctggtgtgatctctttgattatcaaaagaaaatatatgcaaggagttctaattgtggagaaaattaaataggattcagaagtaacatataataatagg |
7045541 |
T |
|
| Q |
137 |
aacaaaaaacaggatgcatt--cagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaat |
234 |
Q |
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|||||||| || ||| ||| ||||| || | ||||||| | ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
7045540 |
aacaaaaagcaagataaatttacagtggaa--aaagtaaagaaaagatcgt-tatatggccattttagaagaccatcaaagctattatctgaatcttaat |
7045444 |
T |
|
| Q |
235 |
ctgcaactt |
243 |
Q |
| |
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|||||||| |
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|
| T |
7045443 |
ttgcaactt |
7045435 |
T |
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