View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_26 (Length: 337)
Name: NF21184_low_26
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 45 - 327
Target Start/End: Complemental strand, 2850568 - 2850286
Alignment:
| Q |
45 |
cacaaacagaatcaaccaacaaaaattcaaaaagaaattatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaactt |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2850568 |
cacaaacagaatcaaccaacaaaaattcaaaaagaaattatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctacaacatacaactt |
2850469 |
T |
|
| Q |
145 |
gatagtgtttgaagaaatagtgctacaactaagacaaatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2850468 |
gatagtgtttgaagaaatagtgctacaactaagacaaatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaa |
2850369 |
T |
|
| Q |
245 |
gagaatgtatcctctcgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
327 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2850368 |
gagaatgtatcctctcaatctccctaggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
2850286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 45 - 327
Target Start/End: Complemental strand, 2902600 - 2902318
Alignment:
| Q |
45 |
cacaaacagaatcaaccaacaaaaattcaaaaagaaattatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaactt |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
2902600 |
cacaaacagaatcaaccaacaaaaattcaaaaagaaattatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctacaacataccactt |
2902501 |
T |
|
| Q |
145 |
gatagtgtttgaagaaatagtgctacaactaagacaaatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902500 |
gatagtgtttgaagaaatagtgctacaactaagacaaatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaa |
2902401 |
T |
|
| Q |
245 |
gagaatgtatcctctcgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
327 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902400 |
gagaatgtatcctctcgatctcccttggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
2902318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 327
Target Start/End: Complemental strand, 42948720 - 42948437
Alignment:
| Q |
45 |
cacaaacagaatcaaccaacaaaaattcaaaaagaaattatagaacat-gttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaact |
143 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||||||||| ||| || ||| ||||||| ||||||| || |||||| | |||| ||||| | |
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| T |
42948720 |
cacagacacaatcaaccaacacaaattcaaaaagaaattatagaacacagttaaagttttcagaacattgttcaacattgcaatgatacaacttacaatt |
42948621 |
T |
|
| Q |
144 |
tgatagtgtttgaagaaatagtgctacaactaagacaaatcattttaaatccctc--aaaagtattttacctttttacaatctccaact-caaacacact |
240 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||| ||||||||| | ||| |||| || | | |||||||||| |
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| T |
42948620 |
tgatagtgtttgaagaaacagtgctacagctaagacaaatcattttaattccctcaaaaaattattttaccatgtta-aatcccctattccaaacacact |
42948522 |
T |
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| Q |
241 |
ctaagagaatgtatcctctcgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
327 |
Q |
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||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
42948521 |
cta--agaatgtatcctctcgatctccctcagaaattgtctccccttcctccatattggtaaactctaagaaatgggttggtctatg |
42948437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 44774914 - 44774999
Alignment:
| Q |
242 |
taagagaatgtatcctctcgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatg |
327 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
44774914 |
taagagaatgtatcctctcgatctccctcggtaattgtctccccttcctccatattgctgaactctaagaaatgagttggtctatg |
44774999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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