View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_28 (Length: 319)
Name: NF21184_low_28
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_28 |
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| [»] scaffold0274 (2 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 100 - 302
Target Start/End: Complemental strand, 41431297 - 41431090
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgatttttaataa-----tggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431297 |
ctaacctgcttcatggaggaatgatttttaataaagtaatggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
41431198 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcagattttaaaacactggtttcaccaagcac |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41431197 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcagattttaaaacactagtttcaccaagcac |
41431098 |
T |
|
| Q |
295 |
atcctcat |
302 |
Q |
| |
|
|||||||| |
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|
| T |
41431097 |
atcctcat |
41431090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 41453120 - 41452921
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgattttta-----ataatggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| ||| |||| | |||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
41453120 |
ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgtcagtgacaatgtcaaattacttaaaacttcgaagtttcttcagagttt |
41453021 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcagattttaaaacactggtttcaccaagcac |
294 |
Q |
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| T |
41453020 |
cgttttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacgtccggctctggcagatttgagaacactggattcaccaagcac |
41452921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 41441907 - 41441786
Alignment:
| Q |
133 |
atggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccggggga |
232 |
Q |
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|||||| ||| |||| | ||||| ||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||| | ||| || |
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| T |
41441907 |
atggtctgaaatgtcggtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcattttcgggttcatcagtgattgtcaaatctgggaga |
41441808 |
T |
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| Q |
233 |
acaacagctgctctattacgtc |
254 |
Q |
| |
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|| |||||||||| |||||||| |
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|
| T |
41441807 |
accacagctgctccattacgtc |
41441786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 41431383 - 41431331
Alignment:
| Q |
14 |
gaaggtattatgtaaatccatagttaagattagaactgaacaaagtatgtctt |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41431383 |
gaaggtattatgtaaatccatagttaagattagaactgaacaaagtatgtctt |
41431331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 41425822 - 41425718
Alignment:
| Q |
157 |
gtcaaattgcttaaagcttcgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtcta |
256 |
Q |
| |
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||||||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||| | || |||||||||| ||||||||| |
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| T |
41425822 |
gtcaaattgcttaaaacttccaagttttctcagagtttcattttcgggttcatcagtgattgtcaaacttgagg------cagctgctctcttacgtcta |
41425729 |
T |
|
| Q |
257 |
gctctggcaga |
267 |
Q |
| |
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||||||||||| |
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|
| T |
41425728 |
gctctggcaga |
41425718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 13707 - 13833
Alignment:
| Q |
176 |
cgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcagattttaaaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13707 |
cgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctttggcagattttaaaa |
13806 |
T |
|
| Q |
276 |
cactggtttcaccaagcacatcctcat |
302 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
13807 |
cactagtttcaccaagcacatcctcat |
13833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 18085 - 18251
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgatttttaataa-----tggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| ||||||||| |||| || || ||||||||||||||| |||| |||||| ||||||||| |
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|
| T |
18085 |
ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt |
18184 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcaga |
267 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || |||||||||| |||||||||||||||||||| |
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| T |
18185 |
cattttcgggttcatcagtgattgtcaaacttgagg------cagctgctctcttacgtctagctctggcaga |
18251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 33363122 - 33362927
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgatttttaataa-----tggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| ||||| ||| |||| | |||| ||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
33363122 |
ctaacctgcttcacggagcaattatttttaataaagtaatggtctgaagtgtcagtaacagtgtcaaattgcttaaaacttcgaagtttcctcagggttt |
33363023 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcagattttaaaacactggtttcaccaa |
290 |
Q |
| |
|
||||||| ||||||| ||||| ||| ||||||| |||||| |||||||||| || || || ||||||||||||||| | |||||||| |||||||| |
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|
| T |
33363022 |
cattttcgggttcatgagtgactgtaaaacccgagggaaccacagctgctccatcacatccagctctggcagatttgagaacactggattcaccaa |
33362927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 33369541 - 33369406
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgatttttaataa-----tggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| ||||| || |||| | ||||| ||||||||||||||| |||||||||||| | ||||||| |
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| T |
33369541 |
ctaacctgcttcatggaggaattacttttattaaagtaatggtctgaggtgtcagtgacagtgtcaaattgcttaaaacttcgaagtttcctaagagttt |
33369442 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggg |
230 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
33369441 |
cattttcgggttcatcagtgattgtcaaacctgggg |
33369406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 267
Target Start/End: Complemental strand, 5373 - 5207
Alignment:
| Q |
100 |
ctaacctgcttcatggaggaatgatttttaataa-----tggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt |
194 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| ||||||||| |||| || || ||||||||||||||| |||| |||||| ||||||||| |
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|
| T |
5373 |
ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt |
5274 |
T |
|
| Q |
195 |
cattttcaggttcatcagtgattgtcaaacccgggggaacaacagctgctctattacgtctagctctggcaga |
267 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || |||||||||| |||||||||||||||||||| |
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|
| T |
5273 |
cattttcgggttcatcagtgattgtcaaacttgagg------cagctgctctcttacgtctagctctggcaga |
5207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 7763573 - 7763635
Alignment:
| Q |
151 |
gacagcgtcaaattgcttaaagcttcgaagtttcttcagagtttcattttcaggttcatcagt |
213 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||| ||||||||||| |||| |||| |||||| |
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|
| T |
7763573 |
gacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
7763635 |
T |
|
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