View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_low_29 (Length: 318)

Name: NF21184_low_29
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_low_29
NF21184_low_29
[»] chr5 (4 HSPs)
chr5 (18-308)||(24400963-24401252)
chr5 (18-105)||(24409372-24409459)
chr5 (135-167)||(8297853-8297885)
chr5 (135-171)||(26405214-26405250)
[»] chr3 (3 HSPs)
chr3 (18-102)||(32772142-32772226)
chr3 (135-171)||(4171123-4171159)
chr3 (135-171)||(50518755-50518791)
[»] chr1 (2 HSPs)
chr1 (135-170)||(7451927-7451962)
chr1 (135-170)||(31290687-31290722)
[»] chr7 (2 HSPs)
chr7 (135-172)||(33719343-33719380)
chr7 (135-171)||(6726085-6726121)
[»] scaffold0050 (1 HSPs)
scaffold0050 (135-171)||(37086-37122)
[»] chr6 (2 HSPs)
chr6 (135-171)||(3880278-3880314)
chr6 (135-171)||(20701463-20701499)
[»] chr4 (1 HSPs)
chr4 (135-171)||(42719535-42719571)
[»] chr2 (1 HSPs)
chr2 (135-171)||(13337629-13337665)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 24401252 - 24400963
Alignment:
Q  18 aacactggccacgacattcttgtctcatctttgttcactgttgttctgtgcaatacagccttatattttccattgctcagtatctataaaataaaatatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24401252 aacactggccacgacattcttgtctcatctttgttcactgttgttctgtgcaatacagccttatattttccattgctcagtatctataaaataaaatatc 24401153  T
Q  118 atgatttcatcaggaatacgaacagagaccggtgagactgagaatacaaacaaactcatttttattgttatcaggatatttaccaacttatgcttatttg 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24401152 atgatttcatcaagaatacgaacagagaccggtgagactgagaatacaaacaaactcatttttattgttatca-gatatttaccaacttatgcttatttg 24401054  T
Q  218 ctaaagtgcccttagttgctggttgttgatcacgtttattttacacacatgccataaggaaccaacaaccactcacactacccttcctttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24401053 ctaaagtgcccttagttgctggttgttgatcacgtttattttacacacatgccataaggaaccaacaaccacttacactacccttcctttg 24400963  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 24409459 - 24409372
Alignment:
Q  18 aacactggccacgacattcttgtctcatctttgttcactgttgttctgtgcaatacagccttatattttccattgctcagtatctata 105  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24409459 aacactggccacgacattcttgtctcatctttgtttacagttgttctgtgcaatacagccttatatttcccattgcttagtatctata 24409372  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 8297885 - 8297853
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaa 167  Q
    |||||||||||||||||| ||||||||||||||    
T  8297885 acgaacagagaccggtgaaactgagaatacaaa 8297853  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 26405214 - 26405250
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  26405214 acgaacaaagaccggtgaaactgagaatacaaacaaa 26405250  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32772226 - 32772142
Alignment:
Q  18 aacactggccacgacattcttgtctcatctttgttcactgttgttctgtgcaatacagccttatattttccattgctcagtatct 102  Q
    ||||||||||| || ||||||||  |||||||| |||||||||||||||| |||| |||||| |||||||||||||||| |||||    
T  32772226 aacactggccaagaaattcttgttgcatctttgctcactgttgttctgtgtaatatagccttgtattttccattgctcattatct 32772142  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 4171159 - 4171123
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4171159 acgaacagagaccggtgaaactgagaatacaaacaaa 4171123  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 50518755 - 50518791
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  50518755 acgaacagagactggtgaaactgagaatacaaacaaa 50518791  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 7451927 - 7451962
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaa 170  Q
    |||||||||||||||||| |||||||||||||||||    
T  7451927 acgaacagagaccggtgaaactgagaatacaaacaa 7451962  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 31290687 - 31290722
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaa 170  Q
    |||||||||||| |||||||||||||||||||||||    
T  31290687 acgaacagagactggtgagactgagaatacaaacaa 31290722  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 33719380 - 33719343
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaac 172  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  33719380 acgaacagagatcggtgaaactgagaatacaaacaaac 33719343  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 6726085 - 6726121
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6726085 acgaacagagatcggtgaaactgagaatacaaacaaa 6726121  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 37122 - 37086
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  37122 acgaacagagaccggtgaaactgataatacaaacaaa 37086  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 3880278 - 3880314
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3880278 acgaacagagaccggtgaaactgaaaatacaaacaaa 3880314  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 20701463 - 20701499
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  20701463 acgaacagagatcggtgaaactgagaatacaaacaaa 20701499  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 42719571 - 42719535
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  42719571 acgaatagagaccggtgaaactgagaatacaaacaaa 42719535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 13337665 - 13337629
Alignment:
Q  135 acgaacagagaccggtgagactgagaatacaaacaaa 171  Q
    |||||||||||||||||| || |||||||||||||||    
T  13337665 acgaacagagaccggtgaaacagagaatacaaacaaa 13337629  T

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