View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_30 (Length: 301)
Name: NF21184_low_30
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 923322 - 923592
Alignment:
| Q |
1 |
caaagggtcacctagaagaggttttttattttgaagggatttcacatccctaacttattggattattgcatatattgatggggcatgttgaattgattct |
100 |
Q |
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| T |
923322 |
caaagggtcacctaaaagaggttttttattttgaagggatttcacatccctaacttattggattattgcatatattgatggggcatgttgcattgattct |
923421 |
T |
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| Q |
101 |
tgaatgtcaacctcaagatattgtttctttcttgaattctccttgatctcttaatgagccaagaaacaacatacaatgtcatgaatatcttctaaagctt |
200 |
Q |
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| T |
923422 |
tgaatgtcaacctcaagatattgtttctttcttgaattctccttgatctcttaatgagccaagaaacaacatacaatgtcatgaatatcttctaaagctt |
923521 |
T |
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| Q |
201 |
agtatatggcattgccatttgctacttgtgacttatatagtagctactaaaactattgaataatttgggag |
271 |
Q |
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| T |
923522 |
agtatatggcattgccatttgctacttgtgagttatatagtagctactaaaactattgaataatttgggag |
923592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 923146 - 923114
Alignment:
| Q |
269 |
gagattcaataattttccgaccattcttctgta |
301 |
Q |
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| T |
923146 |
gagattcaataattttccgaccattcttttgta |
923114 |
T |
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