View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_37 (Length: 256)
Name: NF21184_low_37
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6374349 - 6374112
Alignment:
| Q |
1 |
tccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctc |
100 |
Q |
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| T |
6374349 |
tccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctc |
6374250 |
T |
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| Q |
101 |
cctactcagaatggattaagtgtaacactgatggagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6374249 |
cctactcagaatggattaagtgtaacactgatggagcagctaattcaactacctcagcttgtggaggaatttttagggattgcaatgcaaatctgatttc |
6374150 |
T |
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| Q |
201 |
ttgttttgctgaaaatcttggaggttgcagtgcctatc |
238 |
Q |
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| T |
6374149 |
ttgttttgctgaaaatcttggaggttgcagtgcctatc |
6374112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 28716525 - 28716706
Alignment:
| Q |
34 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
133 |
Q |
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| T |
28716525 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaggttatttggtccccaccctactcaggatggatcaaatgcaacactgacg |
28716624 |
T |
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| Q |
134 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
215 |
Q |
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| T |
28716625 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactctaatgccaatattctttcttgctttgcagaaaa |
28716706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 16490157 - 16490338
Alignment:
| Q |
34 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
133 |
Q |
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| T |
16490157 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaagttatttggtccccaccatactcaggatggatcaaatgcaacactgacg |
16490256 |
T |
|
| Q |
134 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
215 |
Q |
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| T |
16490257 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactcaaatgccaatattctttcttgctttgcagaaaa |
16490338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 24454160 - 24454049
Alignment:
| Q |
127 |
actgatggagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaatcttggaggtt |
226 |
Q |
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|||||||||||||||| ||||| ||| ||||| |||||||| || |||||||| | || | |||||||| ||||| ||||||||||| | || || | |
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| T |
24454160 |
actgatggagcagctacttcaattacttcagcctgtggagggatatttagggactctaactctaatctgctctcttgctttgctgaaaacttaggtggct |
24454061 |
T |
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| Q |
227 |
gcagtgcctatc |
238 |
Q |
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|||||||||||| |
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| T |
24454060 |
gcagtgcctatc |
24454049 |
T |
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