View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_38 (Length: 254)
Name: NF21184_low_38
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5603882 - 5603648
Alignment:
| Q |
1 |
ttttacaacttttcccatctaagttccttccaacattgttaatttactagattcaagattattctttaattatatttcattaccgttcttattaaattat |
100 |
Q |
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| T |
5603882 |
ttttagaacttttctcatctaagttccttccaacattgtta-tttactagattcaagattattctttaattatatttcattaccgttcttattaaattat |
5603784 |
T |
|
| Q |
101 |
catgaatatcttgttttggggtattacagcagagtgaacagaatctgtagtttattcaatatcaaactaactttataatagtaggaggtatcaaaattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603783 |
catgaatatcttgttttggggtattacagcagagtgaacagaatatgtagtttattcattatcaaactaactttataatagtaggaggtatcaaaattac |
5603684 |
T |
|
| Q |
201 |
tatcaaatgaatgaccaagacaacttgcatccataa |
236 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
5603683 |
tattaaatgaatgaccaagacaacttgcatccataa |
5603648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5631488 - 5631722
Alignment:
| Q |
1 |
ttttacaacttttcccatctaagttccttccaacattgttaatttactagattcaagattattctttaattatatttcattaccgttcttattaaattat |
100 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631488 |
ttttagaacttttctcatctaagttccttccaacattgtta-tttactagattcaagattattctttaattatatttcattaccgttcttattaaattat |
5631586 |
T |
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| Q |
101 |
catgaatatcttgttttggggtattacagcagagtgaacagaatctgtagtttattcaatatcaaactaactttataatagtaggaggtatcaaaattac |
200 |
Q |
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| T |
5631587 |
catgaatatcttgttttggggtattacagcagagtgaacagaatatgtagtttattcattatcaaactaactttataatagtaggaggtatcaaaattac |
5631686 |
T |
|
| Q |
201 |
tatcaaatgaatgaccaagacaacttgcatccataa |
236 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
5631687 |
tattaaatgaatgaccaagacaacttgcatccataa |
5631722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 5649074 - 5649281
Alignment:
| Q |
27 |
cttccaacattgttaatttactagattcaagattattctttaattatatttcattaccgttcttattaaattatcatgaatatcttgttttggggtatta |
126 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5649074 |
cttccaacattgttaatttactagattcaagattatttttttaatatatttcattaccattcttattaaattatcatgaatatcttgttttggggtatta |
5649173 |
T |
|
| Q |
127 |
cagcagagtgaacagaatctgtagtttattcaatatcaaactaactttataatagtaggaggtatcaaaattactatcaaatgaatgaccaagacaactt |
226 |
Q |
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||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5649174 |
cagcagagtgaccagaatatgtagtttattcattatcaaactaactttataatagtaggaggtatcaaaattactatcaaatgaatgacaaagacaactt |
5649273 |
T |
|
| Q |
227 |
gcatccat |
234 |
Q |
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|||||||| |
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|
| T |
5649274 |
gcatccat |
5649281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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