View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_39 (Length: 251)
Name: NF21184_low_39
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_39 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6374459 - 6374702
Alignment:
| Q |
1 |
caaactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgaccagcctctatcataaatggtccaaatttcct-aattgatt |
99 |
Q |
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| T |
6374459 |
caaactgtgctaaagatgttaacaatggtggcatgtatcacagttttgcactgaggtgaccatcctctatcacaaatggtccaaatgtcctcaattgatt |
6374558 |
T |
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| Q |
100 |
gaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaacatgtcgaatgagttttcaacatttga |
199 |
Q |
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| T |
6374559 |
gaaaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacattcaaagaacaagtggaatgagttttcaacattaga |
6374658 |
T |
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| Q |
200 |
taaacaaagagagcacatagatgagatatagtatcccctttgct |
243 |
Q |
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| T |
6374659 |
taaacaaagagagcacatagatgagatatagcatcccctttgct |
6374702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 16208 - 16092
Alignment:
| Q |
43 |
gttttgcactgaggtgaccagcctctatcataaatggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcacc |
141 |
Q |
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| T |
16208 |
gttttgcactgtggtgaccaacatctatcacaaatggtccatatttcctcaatagattgaaaatgtaaagttgaatcaaggattgaggaaaaccagcacc |
16109 |
T |
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| Q |
142 |
aaatcatgaaaacaaac |
158 |
Q |
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| T |
16108 |
aaatcatgaaagcaaac |
16092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 28716265 - 28716210
Alignment:
| Q |
117 |
tcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
172 |
Q |
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| T |
28716265 |
tcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
28716210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 16489897 - 16489842
Alignment:
| Q |
117 |
tcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
172 |
Q |
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| T |
16489897 |
tcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
16489842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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