View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_41 (Length: 249)
Name: NF21184_low_41
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 54850019 - 54849863
Alignment:
| Q |
75 |
cgtgatgaaaccaaaaacacactaacaagtaatgttcaatgcgaaaaattgcaaagattgaagatcaaagatgaatatcaacgaaagtgatgagtaacca |
174 |
Q |
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| T |
54850019 |
cgtgatgaaaccaaaaacacactaacaagtaatgttcaatgcgaaaaattgcaaagattgaagatcaaagatgaatatcaacgaaagtgataagtaacca |
54849920 |
T |
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| Q |
175 |
acaaaacagttaggaacgtaactagatttctctcaagagaaaaactgacaccttatc |
231 |
Q |
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| T |
54849919 |
acaaaacagttaggaacgtaattagatttctctcaagagaaaaactgacaccttatc |
54849863 |
T |
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