View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_46 (Length: 236)
Name: NF21184_low_46
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2424522 - 2424745
Alignment:
| Q |
1 |
ttcgagtagaacttgattcaaacttcttaagaagtatcttgtgtttgaaacttttggatgaaaaaatcttcctgagagaggagattccaatacaagtgac |
100 |
Q |
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| T |
2424522 |
ttcgagtagaacttgattcaaacttcttaagaagtatcttgtgttcgaaacttgtggattaaaaaatcttgccgagagaggagattccagtacaagtgac |
2424621 |
T |
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| Q |
101 |
aaatannnnnnncgatatagattagtcaatacagagatggtggatactcca---cactaataatatcgataaaaacatctcctccaaaccactttattat |
197 |
Q |
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| T |
2424622 |
aagtatttttt-cgatatagatcagtcaatacagagatggtggatactcgaaaccactaataatatcgataaaaacatctcctcgaaaccactttattat |
2424720 |
T |
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| Q |
198 |
actagttaagttttgtgttttttct |
222 |
Q |
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||||||||||||||||||||||||| |
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| T |
2424721 |
actagttaagttttgtgttttttct |
2424745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2433225 - 2433445
Alignment:
| Q |
1 |
ttcgagtagaacttgattcaaacttcttaagaagtatcttgtgtttgaaacttttggatgaaaaaatcttcctgagagaggagattccaatacaagtgac |
100 |
Q |
| |
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|||||||| |||||||||||||||| ||||||| || |||||||| ||| ||| ||||||||||||| | ||||||| |||||||| || || |||| |
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| T |
2433225 |
ttcgagtaaaacttgattcaaactttttaagaaataacttgtgttggaatcttgtggatgaaaaaatatggttgagagaa-agattccactataaatgac |
2433323 |
T |
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| Q |
101 |
aaatannnnnnncgatatagattagtcaatacagagatggtggatactccacactaataatatcgat-aaaaacatctcctccaaaccactttatta--t |
197 |
Q |
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||||| ||||||||| |||||| | | ||||| |||||||||||||| |||||||| | | ||||||||| |||||||||||| |||||| | |
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| T |
2433324 |
aaatatatttt-cgatatagactagtcataataaagatgttggatactccacaccaataatatggttaaaaaacatcccctccaaaccaccttattaact |
2433422 |
T |
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| Q |
198 |
actagttaagttttgtgtttttt |
220 |
Q |
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|||||||||||||||| ||||| |
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| T |
2433423 |
cctagttaagttttgtggttttt |
2433445 |
T |
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