View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21184_low_5 (Length: 516)

Name: NF21184_low_5
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21184_low_5
NF21184_low_5
[»] chr2 (1 HSPs)
chr2 (1-516)||(13320038-13320559)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 13320559 - 13320038
Alignment:
Q  1 aatctataatttatgaatatagtgccttggactggccttacataatacgttctcacagtttcctttcctacgtacaatattcactcctaatgtctttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13320559 aatctataatttatgaatatagtgccttggactggccttacataatacgttctcacagtttcctttcctacgtacaatattcactcctaatgtctttgta 13320460  T
Q  101 gttcatagttatgatcatattaaataaataaaaaa---ttcctttgacatattatttatcattatcaaattttaacaattatcaagtctttctcacaaat 197  Q
    |||||||||||| ||||||||||||||| |||| |   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13320459 gttcatagttataatcatattaaataaaaaaaataattttcctttgacagattatttatcattatcaaattttaacaattatcaagtctttctcacaaat 13320360  T
Q  198 atatatcagtgaaaattaagaacctaaagtctcttattctctgttcataaaatcgattgaatgatagtgtcatttcttgctcaatctttcttcatcaaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  13320359 atatatcagtgaaaattaagaacctaaagtctcttattctcagttcataaaatcgattgaatgatagtctcatttcttgctcagtctttcttcatcaaaa 13320260  T
Q  298 tcttgacaatattttatattttttagatattgaagtct---ctccttaaaaataatattttatgtcagcaaaaatacactcttgaatgttgatattttat 394  Q
    ||||||||||||||||||||||| ||||||||||| ||   || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  13320259 tcttgacaatattttatatttttaagatattgaagcctttccttcttaaaaataatattttatgttaacaaaaatacactcttgaatgttgatattttat 13320160  T
Q  395 ccgactctagtatatttttactgtcaatcataaagttttttccatagaacaacaccttcgttaacaaccaaatgagagaaatccaaaaatcttctacctt 494  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  13320159 ccgactctagtatatttttattgtcaatcataaagttttttccatagaacaacaccttcgttgataaccaaatgagagaaatccaaaaatcttctacctt 13320060  T
Q  495 atccaataatgtattatcgcct 516  Q
    |||||| |||||||||||||||    
T  13320059 atccaacaatgtattatcgcct 13320038  T

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