View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_50 (Length: 210)
Name: NF21184_low_50
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14458600 - 14458407
Alignment:
| Q |
1 |
aaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggtgattt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14458600 |
aaggaaatgctatgaagtctatctatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcaggtgattt |
14458501 |
T |
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| Q |
101 |
tagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagcaacctagtagt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458500 |
tagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagcaacctagtagt |
14458407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14467483 - 14467291
Alignment:
| Q |
1 |
aaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggtgattt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
14467483 |
aaggaaatgctatgaagtctatctatgaaattcttgaagaaaaagatttctc-aagattacatcatatatagaaatagtacacatcctctcaggtgattt |
14467385 |
T |
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| Q |
101 |
tagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagcaacctagtagt |
194 |
Q |
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||||||||||||||| || || |||| ||||||||||||| ||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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| T |
14467384 |
tagaataagcaagactcaggccagcggcattttctgggaggctgtttggcctcgattacttgcgaaaggttggcattcagagcaacctagtagt |
14467291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 2959000 - 2959149
Alignment:
| Q |
5 |
aaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggtgattttaga |
104 |
Q |
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|||| |||||||||| || ||||| ||||| |||||||| ||||||| ||||||||| ||| |||||||||| || |||||||| ||| ||||||||| |
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| T |
2959000 |
aaattctatgaagtccatttatgagtttcttaaagaaaaatatttctcaaagattacaacatttatagaaatactatacatccttatgggagattttaga |
2959099 |
T |
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| Q |
105 |
ataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgt |
155 |
Q |
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|||||||| || |||||||| |||||||| | ||| |||||||||||||| |
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| T |
2959100 |
ataagcaaaactcaagcaagtgacatttt-ttggaaactgtttggcctcgt |
2959149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 2941031 - 2941140
Alignment:
| Q |
72 |
gaaatagtacacatcctttcgggtgattttagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggtt |
171 |
Q |
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|||||| || |||||||| |||||||||||| |||||||| || |||||||| |||||||| | ||| ||||||||||||| ||||| |||| |||| |
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| T |
2941031 |
gaaatactatacatccttatgggtgattttagcataagcaaaactcaagcaagtgacatttt-ttggaaactgtttggcctcgcttacttacaaaaggtt |
2941129 |
T |
|
| Q |
172 |
ggcattcagag |
182 |
Q |
| |
|
||||||||||| |
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|
| T |
2941130 |
ggcattcagag |
2941140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 12069274 - 12069152
Alignment:
| Q |
1 |
aaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggtgattt |
100 |
Q |
| |
|
||||||||| | |||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
12069274 |
aaggaaatgatttgaagtctatttatgaaattcttgaagaaaaatatttctccaagatta---------tagaaatagtacacatcctctcaggtgattt |
12069184 |
T |
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| Q |
101 |
tagaataagcaagacgcaagcaagcgacattt |
132 |
Q |
| |
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| ||||||||||||| ||||| || ||||||| |
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|
| T |
12069183 |
tggaataagcaagactcaagctagtgacattt |
12069152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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