View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_low_51 (Length: 201)
Name: NF21184_low_51
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 43538728 - 43538897
Alignment:
| Q |
18 |
gtaatgcacagggagaaattgaaaagagttaacattaggaatggtttataatttgatgtgttcaattactgagcaacaacaatgtctaaccacctctcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43538728 |
gtaatgcacagggagaaattgaaaagagttaacattaggaatggtttataatttgatgtgttcaattactgagcaacaacaatgtctaaccacctctcag |
43538827 |
T |
|
| Q |
118 |
aaaaagaagnnnnnnnncgacgtttaaccataaatcatagtataacacattacacccttttttgtctgtg |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43538828 |
aaaaagaagaaaaaaaacgacgtttaaccataaatcatagtataacacattacacccttttttgtgtgtg |
43538897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 35045605 - 35045642
Alignment:
| Q |
62 |
tttataatttgatgtgttcaattactgagcaacaacaa |
99 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
35045605 |
tttataatttgttgtgttcaattattgagcaacaacaa |
35045642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University