View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21184_low_6 (Length: 496)
Name: NF21184_low_6
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4164122 - 4163910
Alignment:
| Q |
1 |
aataaaaataaaaatataacctctgttccatttcctccattaaagcaattcataaaagactccaaaggcaaacccagttgctttaaacagtcatcctgcc |
100 |
Q |
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| T |
4164122 |
aataaaaataaaaatataacctctgttccatttcctctattaaagcaattcataaaaggctccaaaggcaaacccagttgctttaaacagtcatcctgcc |
4164023 |
T |
|
| Q |
101 |
acatcttgatatttctctcaattgccagaaactcaaagcaattaatcaaactataatgttcatcctgcatcacagtttagacatttaaggttcaatataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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| T |
4164022 |
acatcttgatatttctctcaattgccagaaactcaaagcaattaatcaaactataatgttcatcctgcatcacagtttacatatttaagattcaatataa |
4163923 |
T |
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| Q |
201 |
ttataagagatca |
213 |
Q |
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||||||||||||| |
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| T |
4163922 |
ttataagagatca |
4163910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 368 - 478
Target Start/End: Complemental strand, 4163830 - 4163710
Alignment:
| Q |
368 |
gacgcaattactgcatcaaatccaaatcgaatt----------ataagaaactcactctaaggtatggtttctaggtgttctttatacttaccacaatag |
457 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
4163830 |
gacgcagttactgcatcaaatccaaatcgaattataaaaaattataagaaactcactctgaggtatggtttctaggtgttctttatacttaccacattag |
4163731 |
T |
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| Q |
458 |
gccaaatattgagggcacatg |
478 |
Q |
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||||||||||||||||||||| |
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| T |
4163730 |
gccaaatattgagggcacatg |
4163710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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