View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21184_low_9 (Length: 471)
Name: NF21184_low_9
Description: NF21184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21184_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 522202 - 521813
Alignment:
| Q |
19 |
tacttaacatatgaaaggtaatgtgaaatactttgctagtaaatactcaagtaagg-----acgctacttagagcatctccaatggtcatattttaaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
522202 |
tacttaacatatgaaaggtaatgtgaaatactttgctagtaaatactcaagtaaagacgctacgctacttagagcatctccaatggtcatattttaaaga |
522103 |
T |
|
| Q |
114 |
actcactctgagtttcatacacttctatcaattggtcaccccaatgccacatcatacttatgaaactcatatacatttgctgtaatgat-aaaaaattat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
522102 |
actcactctgagtttcatacacttctatcaattggtcaccacaataccacatcatacttatgaaactcatatacatttgctgtaatgataaaaaaattat |
522003 |
T |
|
| Q |
213 |
gcaactcacgcatttatatttctttattagtatgaaacaaatttttattcaaatgttaccattgcttaattcatctacttcaacaaaatctatgcaactc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
522002 |
gcaactcacgcatttatatttctttattagtatgaaacaaatttttattcaaatgctaccattgcttaattaagctacttcaacaaaatctatgcaactc |
521903 |
T |
|
| Q |
313 |
actttgacacctcaagttcctccaatgggtagaaaatatacgaaacatgttcattcttctatagaactctagtagatacccttattgaat |
402 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
521902 |
actttgacacctcaagttccaccaatgggtagaaaatataagaaacatgttcattcttctattgaactctagtagatacccatattgaat |
521813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 44129557 - 44129500
Alignment:
| Q |
290 |
cttcaacaaaatctatgcaactcactttgacacctcaagttcctccaatgggtagaaaa |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
44129557 |
cttcaacaaaat-tatgcaactcactttgccacctcaagctcctccaatggttagaaaa |
44129500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 30267162 - 30267228
Alignment:
| Q |
278 |
ttaattcatctacttcaacaaaatctatgcaactcactttgacacctcaagttcctccaatgggtag |
344 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| || |||| ||||||| ||||||||| |
|
|
| T |
30267162 |
ttaattaaactacttcaacaaaatctatgcaacctactttgccatctcaggttcctctaatgggtag |
30267228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 9639242 - 9639306
Alignment:
| Q |
155 |
caatgccacatcatacttatgaaactcatatacatttgctgtaatgataaaaaattatgcaactc |
219 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||| | ||||||||| ||||||| ||||| |
|
|
| T |
9639242 |
caatgccacgtcatacttatgtaactcatacacattttattcaatgataaataattatgaaactc |
9639306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 5033268 - 5033206
Alignment:
| Q |
290 |
cttcaacaaaatctatgcaactcactttgacacctcaagttcctccaatgggtagaaaatata |
352 |
Q |
| |
|
|||||| |||||| || ||||||||||||||| |||||||| |||||||| ||| |||||||| |
|
|
| T |
5033268 |
cttcaataaaatcgatacaactcactttgacatctcaagttactccaatgagtacaaaatata |
5033206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 4309100 - 4309064
Alignment:
| Q |
155 |
caatgccacatcatacttatgaaactcatatacattt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4309100 |
caatgccacatcatacttatgaaactcatatccattt |
4309064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 32977335 - 32977253
Alignment:
| Q |
287 |
ctacttcaacaaaatctatgcaactcactttgacacctcaagttcctcc-aatgggtagaaaatatacgaaacatgttcattct |
369 |
Q |
| |
|
||||||||||||||||||||||| | |||||| | | ||| |||||||| ||||| ||||||| ||| | |||||||||||||| |
|
|
| T |
32977335 |
ctacttcaacaaaatctatgcaattaactttgccgcttcaggttcctccaaatggatagaaaa-ataaggaacatgttcattct |
32977253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University